DY271366

Overview
NameDY271366
Unique NameDY271366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271366_ssr53 microsatellite DY271366_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 9.062e-57
Identity = 122/218 (55.96%), Postives = 150/218 (68.81%), Query Frame = 2
Query:   68 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     +  ERRPRR ALD+ PFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ E++G D SW G +++SY+T    P+N +K+KVKA LKNGVLL+SI K +
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTK 230          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.890e-54
Identity = 117/219 (53.42%), Postives = 146/219 (66.67%), Query Frame = 2
Query:   65 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT  ERRP R ALD+ PFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ E+ G D    G +++SY+T    P+N  K+K+KA LKNGVL +SI K +
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTE 224          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.017e-52
Identity = 100/172 (58.14%), Postives = 130/172 (75.58%), Query Frame = 2
Query:  188 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKA-GGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            GG+NKD SV+V HV+ G+QGT  E++PRRTA+DI PFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E+  GGD SWS  +++SY+T    P+NCEK+KVKA LKNGVL ++I K +
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTK 170          

HSP 2 Score: 23.0978 bits (48), Expect = 3.017e-52
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  675 YFPFPKTNGERRVLDV 722
            Y   PKT  ER+V+DV
Sbjct:  163 YITIPKTKVERKVIDV 178          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 4.255e-51
Identity = 105/214 (49.07%), Postives = 146/214 (68.22%), Query Frame = 2
Query:   65 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT  ER+PRR+++DI PFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR E+ GG+  WS  S++ Y+T    P+NCEK KVKA LK+GVL ++I K +
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTK 221          

HSP 2 Score: 21.557 bits (44), Expect = 4.255e-51
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  675 YFPFPKTNGERRVLDV 722
            Y   PKT  ER V+DV
Sbjct:  214 YITIPKTKIERTVIDV 229          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.925e-46
Identity = 103/204 (50.49%), Postives = 129/204 (63.24%), Query Frame = 2
Query:   92 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+  E+RP+ R  +D+ PFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E +  D SWSG S +SY T    P+NCEK+K+KA LKNGVL ++I K +
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTK 216          

HSP 2 Score: 21.557 bits (44), Expect = 4.925e-46
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  675 YFPFPKTNGERRVLDV 722
            +   PKT  ER+V+DV
Sbjct:  209 FITIPKTKVERKVIDV 224          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.305e-42
Identity = 100/220 (45.45%), Postives = 123/220 (55.91%), Query Frame = 2
Query:   68 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKA-----GGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G   +RRPRR   DI PFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E       GGD  W   S +SY+     P+ C+K++V+A LKNGVLL+S+ K +
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRE 227          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.898e-38
Identity = 104/224 (46.43%), Postives = 134/224 (59.82%), Query Frame = 2
Query:   71 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAE-----KAGGDPSWSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G   +RRPRR+ ALD I PFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ E     +  GD  W   S +SY+     P+ C+K+KV+A LKNGVLL+++ K +
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTE 229          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.113e-13
Identity = 69/209 (33.01%), Postives = 104/209 (49.76%), Query Frame = 2
Query:   71 VSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPSWSGASFNSYNTPSPAPENCEK-NKVKANLKNGVLLLSISK 691
            + R   +SIA R+    SV  PA S +  +   AVR+    GEN D  VD++  S          PRR   D     + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + E+ GG+   SG     + +    P+   K +++KA +KNGVL + I K
Sbjct:    7 LKRLLSSSIAPRSR---SVLRPAVSSR-LFNTNAVRSYDDDGENGD-GVDLYRRSV---------PRRRG-DFFS-DVFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGN--RRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPK 195          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  299 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPSWSGASFNSYNTPSPAPENCEK-NKVKANLKNGVLLLSISK 691
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   E+ G D S  G  F S       PE   K +++KA +KNGVL + I K
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEE-GEDVSGDGRRFTS---RIELPEKVYKTDEIKAEMKNGVLKVVIPK 195          
BLAST of DY271366 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.407e-11
Identity = 56/201 (27.86%), Postives = 91/201 (45.27%), Query Frame = 2
Query:  143 SRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDIL-----PFGLMDPSF-----PT--RTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEKAGGDPS----WSGASFNSYNTPSPAPENCEKNKVKANLKNGVLLLSISKNQ 697
            +R    +L    A + GE +D  ++  V+   + +  +  PRR     L       G   P+      PT   T+ Q  + M+R+ ++    P +      GQV      KE+++  K+R+++PGL             L IKG+H+AE+  G P     WS  S+  YNT    P++ +   +KA LKNGVL L I + +
Sbjct:   31 NRHNPMKLNRFMATSAGEQED-KMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLM----GQV------KEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTE 220          
The following BLAST results are available for this feature:
BLAST of DY271366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HS22C_PETHY9.062e-5755.96Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.890e-5453.42Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN3.017e-5258.14Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA4.255e-5149.07Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH4.925e-4650.4925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT6.305e-4245.45Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ1.898e-3846.4326.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH2.113e-1333.0123.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH3.052e-1236.3623.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS26M_ARATH4.407e-1127.8626.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YL17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271366 ID=DY271366; Name=DY271366; organism=Citrus clementina; type=EST; length=1084bp
CTCAAGTGCTCAGAAAACAAAGTGAAAATAAATGGCTGCAACATTATCTA
TCTCATCATCATCACCCTTGGTATCGCGCGAGGCCAGGACCTCAATAGCT
AGGAGAAATGTGGCGCCATGCTCGGTAACCTTACCGGCAACGTCAAGGAA
AGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGTGGGGAGAACA
AGGATACTTCGGTTGACGTCCATGTTAATTCCGGTAACCAAGGAACCCAA
GCGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTTACCTTTCGGTTT
GATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTGGACACAA
TGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAGCCGGGCT
GGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGGAGGAAAA
TGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAGGATGTCA
AAGTGTCGGTGGAAGATGATGTCCTTGTCATTAAAGGAGAGCACAGGGCA
GAAAAAGCTGGAGGTGATCCGAGTTGGTCTGGTGCAAGTTTTAACTCTTA
CAATACTCCGTCTCCAGCTCCTGAAAACTGTGAAAAAAATAAGGTCAAGG
CAAACCTCAAAAATGGTGTTCTTTTACTTTCCATTTCCAAAAACCAATGG
GGAGCGCAGGGTCCTTGATGTCTAAATTCCGGAAATTAAAAGGAGGGGGC
CCACCCCAAAGGGGAAAGGTTAAAGGTTTGGAACCACATTCCCCCCTTTT
TAAGTCCAAAAAAAATTTGGAAAATTTGTGTAAACAAAAAAAAAAAAAAA
AAAAAAACCCCCCCATTTCTTGTGCAATTATGGCTTCTTTAAAAAAAAAT
TTGTTATAGTATTCTTGTGCCGAGGGAAGGGTGCATTTCAGCCAAAAAAA
AAAAAATTTCTTACCCCCCCCTCTGGCACCCCCCAATCGATGGTTGTAAC
AGTTTTTCAAATGCTTTTTTTCCGAAAACGTGGCCCGCGTGACTATCAGA
TTTGTTCAGGATATATGTGTCAATAGAAAAATAG
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