DY271426

Overview
NameDY271426
Unique NameDY271426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length957
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.403e-40
Identity = 118/297 (39.73%), Postives = 152/297 (51.18%), Query Frame = 1
Query:  121 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDET-PAAAPKSPVKANSPKSLPKLALAPCNPV*TQTSLIEHSRPEFHNLVSFPEEKHPVKQLGSMGLFPEEGNKESKPLGPPLKTSREPQPKKGNNFFILSTFPWVTLAP 957
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T             +IRG KAKVNFP+E   A + K  VKAN  K + K    P        +L+++S   F N+  F EEKH V    +   F    + ++   G    +S      +G+N F  S F W   AP
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP------SPALVQNSNISFENM-CFMEEKHQVSN-NNNNQFGMTNSVDAGCNGYQYFSS-----DQGSNSFDCSEFGWSDQAP 278          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 6.022e-38
Identity = 114/312 (36.54%), Postives = 143/312 (45.83%), Query Frame = 1
Query:  121 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPKSLPKLALAPCNPV*TQTSLIEHSRPEFHNL--------VSFPEEKHPV--KQLGSMGLFPEEGNKESKPLGPPLKTSREPQPKKGNNFFILSTFPWVTLAP 957
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T             +IRG KAKVNFP+E   +       +    +L K    P   V T      H   ++ N         +SF EEK  +   Q G    F   GN   +               +G+N F  S F W    P
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSV-TLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQYF----------SSDQGSNSFDCSEFGWSDHGP 292          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.345e-29
Identity = 99/287 (34.49%), Postives = 130/287 (45.30%), Query Frame = 1
Query:  121 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPKSLPKLALAPCNPV*TQTSLIEHSRPEFHNLVSFPEEKHPVKQLGSMGLFPEEGNKESKPLGPPLKTSREP--QPKKGNNFFILSTFPW 942
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+             +IRGKKAKVNFP E P  A K    + + K+ PK ++     V          +P F+NL +     +P     S   F +  N    P         +P     +G+N F  S F W
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQKPTV----------KPAFNNLANANAFVYPSANFTSNKPFVQPDNMPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW 270          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 7.379e-28
Identity = 94/260 (36.15%), Postives = 118/260 (45.38%), Query Frame = 1
Query:  121 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKANSPKSLPK-LALAPCNPV*TQTSLIEHSRP----------EFHNLVSFPEEKHPVK-QLGSMGLFPE-EGNKESKP 861
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT             +IRG KAK+NFPD      P      +SP+S  +  A   C    +++ L + S P          EF NL    E  + +K Q+ S+  F E +GN   +P
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQP 225          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.262e-19
Identity = 50/102 (49.02%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  427 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFP--------DETPAAAPKSPVKANSPKSLPKLALA 708
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T             KIRG+KAK+NFP        D  P       +  N  +SL +  +A
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEEADTKPGGNQNELISENQVESLSEDLMA 140          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.542e-17
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1
Query:  439 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDET 639
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT             +IRG KAK+NFP+E+
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNES 84          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.014e-17
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  361 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPV 666
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T             + RG KAK+NFP++     P  P+
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPPL 145          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.860e-17
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  367 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKSPVKAN 675
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP     ++  SPV A+
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD 207          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.908e-16
Identity = 56/138 (40.58%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  394 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDE--TPAAAPKSPVKANSPKSLPKLA-LAPCNPV*TQTSLIEHSRPEFHNLVSFPEEKH 798
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + RG KAK+NFP+   T      S    NS +  P L  +  C  + + +  +E  +P    L    EE H
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGTQTIQRNSHFLQNSMQ--PSLTYIDQCPTLLSYSRCMEQQQPLVGMLQPTEEENH 174          
BLAST of DY271426 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.798e-16
Identity = 39/71 (54.93%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  448 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXKIRGKKAKVNFPDETPAAAPKS 660
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             K +G KAK+NFP+    A+  S
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTS 158          
The following BLAST results are available for this feature:
BLAST of DY271426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RA212_ARATH8.403e-4039.73Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH6.022e-3836.54Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF1_ORYSJ1.345e-2934.49Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH7.379e-2836.15Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.262e-1949.02Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH1.542e-1758.21Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH2.014e-1742.16Ethylene-responsive transcription factor ERF110 OS... [more]
EF109_ARATH5.860e-1745.19Ethylene-responsive transcription factor ERF109 OS... [more]
RAP26_ARATH2.908e-1640.58Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH3.798e-1654.93Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271426 ID=DY271426; Name=DY271426; organism=Citrus clementina; type=EST; length=957bp
CTGAAGAATCCATAACTCTCTCAAGCCAACAAAAGCAAATTTTACATTTA
ACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGTGCCTGAACAAACCAGA
AGAAACGAGAAACCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTAC
ATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAGTATCT
CTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCG
TCGACGATGACTTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAA
GAGTCTGACATTGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGC
TGATATTAAGCCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTA
CAGCCGTGAAGCACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGG
AAGAATCAATATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGC
TGAGATCCGTGACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCA
ATACCGCTGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAAGATC
CGTGGGAAGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGC
TCCAAAGAGCCCAGTGAAGGCCAACTCCCCGAAATCCCTTCCCAAGCTTG
CCCTAGCCCCGTGCAACCCAGTTTGAACCCAAACTTCATTAATTGAACAC
TCCCGACCAGAGTTCCACAACCTGGTGAGTTTTCCGGAGGAGAAACACCC
AGTGAAACAGTTAGGATCTATGGGCCTCTTCCCTGAGGAGGGGAATAAGG
AATCAAAACCCCTTGGGCCACCCCTTAAAACATCCAGGGAACCTCAACCC
AAAAAAGGGAATAACTTCTTTATATTGTCTACTTTTCCCTGGGTCACACT
AGCCCCC
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