EY832816

Overview
NameEY832816
Unique NameEY832816
TypeEST
OrganismCitrus trifoliata ()
Sequence length986
Libraries
Library NameType
Poncirus trifoliata bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY832816 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.672e-44
Identity = 93/102 (91.18%), Postives = 93/102 (91.18%), Query Frame = 1
Query:  130 MARSLFKAKLLLAPGGDGISLSISRRGYAAAAPLRTISARGGSRTGIMEKNDLRPAVREDSGASSAWGPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 435
            MARSLFKAKLLLAP  DGISLSISRRGYAAAAPL TIS     RTGIMEKNDLRPAVREDSGASSAW PDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTIS-----RTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of EY832816 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.096e-21
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  130 MARSLFKAKLLLAPGGDGISLSISRRGYAAAAPLRTISARGGSRTGIMEKNDLRPAVREDSGA-----SSAWGPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 432
            MARS+   KLL A   DG+ +SISRRGY+ A P    ++ G  R G M K + R A++E S +     SSAW PDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFG--RPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of EY832816 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.936e-19
Identity = 54/106 (50.94%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  130 MARSLFKAKLLLAPGGDGISLSISRRGYAAAAPLRTISARGGSRTGIMEKNDLRPAVREDSGA-----SSAWGPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 432
            MARS+   K L A   D + +SISRRGY+ A P    ++ G  R G M K + R A++E S +     SSAW PDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFG--RPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of EY832816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI7.672e-4491.18Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI4.096e-2154.72Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.936e-1950.94Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionPT11-C2-300-097-F08-CT.F Poncirus trifoliata bark, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY832816 ID=EY832816; Name=EY832816; organism=Citrus trifoliata; type=EST; length=986bp
GAGCGAGCCGCTAGCTTTAGTCTATAGCTACTGCAGGAGCAGAATCTTTC
TTCTTCTGTAGTAGTACTGTACAGAAACATCCCAGCTAGCTATCTTCATA
TCTACTAAGTTCTAAAAGTAAATAAAACAATGGCCCGCTCTCTCTTCAAA
GCTAAGCTTCTTCTTGCTCCTGGTGGTGATGGCATCTCTCTCTCCATTAG
CAGGAGAGGATATGCAGCAGCAGCACCCTTGAGGACCATATCGGCTAGGG
GAGGGTCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGTG
AGAGAGGATTCCGGGGCCTCTTCTGCCTGGGGCCCAGATCCCATCACTGG
GTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTC
GAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCGCG
CATAGCACAGCAGATCCTTTGCTGTTAGCGGTGCTTTTAACTTTTAAGTG
ATGTTGTTACAGTAGCAATTTTGACTCATTCTAAGTCTTTTTTGCTGTTG
AATTGATATCAACTTGTTATTTACAACTTTTAATAGTGCATTTCCATGAT
TTATATCCTACTCCAAAAAAAAAATTGAACCAACTGGTGTTTACTGGATG
GGACATAAAAAAATAAGGTCATGGTTAATTAAAAAAAAAAAAAAAAAGGG
GGGGCGCGTCTAAAGGATCCAAGCTTAGGAACGCCGGAGTGCAAACGCCA
AACCCTTTCAAAAGGGGAACCTACATACCGAGGCGAGGGGGCCGCCTTTA
AAAACCGCCGAAGGGGGAACAACCCTGGCGGTGCCCACATTCAAATCCCC
CTGGAGGCACACCCGCCTTTTAGCCACCTGGGAGAACATAACGCAAAAAG
GGGCCCCCTCCGGTGCGGACCTTATACACCCACCCTGCCCCGCGACCGGC
ACGCGTGCGACAGTGGGGCATACCATGTCCACGGTT
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