DY303996

Overview
NameDY303996
Unique NameDY303996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1048
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY303996 vs. ExPASy Swiss-Prot
Match: LHTL8_ARATH (Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 5.371e-75
Identity = 148/199 (74.37%), Postives = 157/199 (78.89%), Query Frame = 1
Query:  337 MEERPETELISIPATPRASTPEVLTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNENAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTFVDFVSAA*KLFQGKRYKTLCGACPKPPFGER--TWPPALLSFHTVLFNRTGTA 927
            M+ERPETELISIPATPR STPE+LTPSGQRSPRPA+K   SS  WTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRN NAHYAAFHNLNAGVGFQAL+LPVAFAFLGWSWGILSLTIAYCWQLYT    V    +   GKRY        +  FGER   W    L+    ++   GTA
Sbjct:    1 MDERPETELISIPATPRVSTPEILTPSGQRSPRPATKP--SSATWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLH-EAVPGKRYNRYV-ELAQAAFGERLGVW----LALFPTVYLSAGTA 191          
BLAST of DY303996 vs. ExPASy Swiss-Prot
Match: LHTL7_ARATH (Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.391e-14
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  589 PQDAWLPITESRNENAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYT 771
            P + WLPITESR  N + A FH L +G+G Q +LLP AFA LGW WG + LT+ + W+LYT
Sbjct:   25 PVEEWLPITESRKGNVYTATFHLLCSGIGLQVILLPAAFAALGWVWGTIILTVGFVWKLYT 85          
BLAST of DY303996 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.333e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  601 WLPITESRNENAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTFVDFVSAA*KLFQGKRY 822
            WLPIT SRN N +Y+AFHN+ A VG   L LP A + LGW  G++ L +++   LYTF   +    ++F+GKR+
Sbjct:   27 WLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMH-EMFEGKRF 99          
The following BLAST results are available for this feature:
BLAST of DY303996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LHTL8_ARATH5.371e-7574.37Lysine histidine transporter-like 8 OS=Arabidopsis... [more]
LHTL7_ARATH1.391e-1455.74Lysine histidine transporter-like 7 OS=Arabidopsis... [more]
LHTL3_ARATH9.333e-1145.95Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ7YG15RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY303996 ID=DY303996; Name=DY303996; organism=Citrus clementina; type=EST; length=1048bp
AATGAAACTAGTCAAACCTCATTTCTGACTTCCGCATAGATTTTCACATT
ATCACCATCGTCCGAAACACCCACTTTGGGCCGCTACCGGACGGTCACGA
TCAAAGAGGTTCAAACTTTAATGTCTCCTGCCACCCACCATTTCACATCG
ACATCGTTCAGTTTTCTCAGTGACTGCAGACTGAGACCAGCCAGCCATAT
AATAAAATAGAAAAAGCGACGAAGAAAAAGAAAACCAAACCCCTCCATTA
TTTCTTATCGCACTTACCACCATTCGCAAGCCAAAGAAGTGACGCGCACA
CCAAGTGAAAAAGAACTGATGAGCAATATTAATACTATGGAGGAGAGGCC
AGAGACGGAGCTGATATCCATTCCAGCGACGCCACGTGCGTCAACACCGG
AGGTACTAACGCCGTCAGGTCAAAGGTCGCCAAGGCCAGCATCAAAGGAG
GCGAAATCTTCAACGGCATGGACTCCGACTTCGTTTATATCACCGAGGTT
TTTGAGTCCTATAGGGACGCCAATGAAGAGGGTATTGGTAAACATGAAGG
GTTATTTGGAGGAGGTGGGTCACTTAACCAAGCTCAATCCTCAAGACGCT
TGGCTCCCCATTACTGAATCACGTAATGAGAATGCACACTACGCTGCGTT
TCATAACTTGAATGCTGGTGTTGGGTTTCAAGCGCTGCTTTTGCCTGTGG
CCTTTGCTTTTCTCGGCTGGAGTTGGGGAATACTTTCCTTAACAATAGCC
TATTGTTGGCAACTCTACACTTTTGTGGATTTTGTTTCAGCTGCATGAAA
GCTGTTTCAAGGAAAGAGATACAAAACATTATGTGGAGCTTGCCCCAAGC
CTCCATTTGGGGAAAGAACTTGGCCTCCGGCCTTGCTTTCCTTCCACACC
GTTTTATTTAATCGGACTGGAACTGCACCCACCTTTGATTCCCCCTGGGC
AGGGCAAAACGAAAAAAAATTGTCTTTTTCAAAATGGTTTGGTGGCCCCC
CCTTGAAACTCCCAAATCCCCCCAAAAACCCGGGTGGAATGGGGGTCC
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