DY304941

Overview
NameDY304941
Unique NameDY304941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9263 contig Ccv1_Contig9263:1..1260. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 6.436e-81
Identity = 158/215 (73.49%), Postives = 181/215 (84.19%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTS--QNDRLS*YDGHQKQHIRPCCS 754
            MARR +EEYD LF+VVLIGDSGVGKSNLLSRFTR +FCLESKS IG  F+T T QVEGRT+KAQIW+TA QE+Y AIT+AYYRGA GALL+YDVTKPTTFENVSRWLKELRDHADS IVIM+IGNKTDLKHLRAVAT+DA SYAE+EGLSF+ETSALEA+NVE AFQTILSE+YRIISKKS+SS +   + +  +   +      +    +PCCS
Sbjct:    1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCS 215          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 5.461e-72
Identity = 141/214 (65.89%), Postives = 173/214 (80.84%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPS-TSQNDRLS*YDGHQKQHIRPCCS 754
            MA R++ EYD LF++VLIGDSGVGKSN+LSRFTR +FCLESKS IG  F+T T QVEG+T+KAQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TF+NV RWL+ELRDHADS IVIMM GNK+DLKHLRAV+ +D  + AE+EGLSF+ETSALEA+N+E AFQTIL+EIY IISKK+L++ E + +   Q   ++  D    Q  R CCS
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQR-RSCCS 213          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 267.7 bits (683), Expect = 1.030e-70
Identity = 137/192 (71.35%), Postives = 162/192 (84.38%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTS 691
            M  R+++EYD LF++VLIGDSGVGKSN+LSRFTR +FCLESKS IG  F+T T QVEG+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TF+NV RWL+ELRDHADS IVIMM GNK+DL HLR+VA +D  S AE+EGLSF+ETSALEA NVE AFQTIL EIY IISKK+L++ E A + S
Sbjct:    1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANS 192          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 4.327e-69
Identity = 132/192 (68.75%), Postives = 160/192 (83.33%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTS 691
            MA R++ EYD LF++VLIGDSGVGKSN+LSRFTR +FCLESKS IG  F+T T QVEG+T+KAQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TF+NV RWL+ELRDHADS IVIMM GNK+DL HLRAV+  D  + +E+EGLSF+ETSALEA N+E AFQTIL+EIY I+SKK+L++ E     S
Sbjct:    1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGAS 192          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 5.651e-69
Identity = 132/192 (68.75%), Postives = 163/192 (84.90%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTS 691
            MA R++ EYD LF++VLIGDSGVGKSN+LSRFTR +FCLESKS IG  F+T T QVEG+T+KAQIW+TA QE+Y AIT+AYYRGA GALL YD+TK  TF+NV RWL+ELRDH DS IVI++ GNK+DLKHLRAV+ QD  +  ++EGLSF+ETSALEA+NV+ AFQTIL++IY IISKK+L++ E A ST+
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTA 192          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 3.101e-67
Identity = 131/193 (67.88%), Postives = 159/193 (82.38%), Query Frame = 2
Query:  116 MARRLEEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLSSWEPAPSTSQ 694
            M+ + +++YD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TFENV RWLKELRDHADS IVIM++GNK+DLKHLR V T+ A ++ EREGLSF+ETSALE+ NVE AFQ IL+EIY I+SKK L S +  P   +
Sbjct:    1 MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGE 193          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of DY304941 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 1.303e-65
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 2
Query:  131 EEEYD*LFEVVLIGDSGVGKSNLLSRFTRIKFCLESKSLIGC*FSTLTRQVEGRTIKAQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATQDALSYAEREGLSFVETSALEAINVENAFQTILSEIYRIISKKSLS 664
            ++EYD LF+VVLIGDSGVGKSNLLSRFTR +F LESKS IG  F+T + QV+G+TIKAQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T +A ++AE+ GLSF+ETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
The following BLAST results are available for this feature:
BLAST of DY304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA2A_ARATH6.436e-8173.49Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU5.461e-7265.89Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH1.030e-7071.35Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_LOTJA4.327e-6968.75Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC5.651e-6968.75Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPTC6_CHLRE3.101e-6767.88Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_RAT1.303e-6570.79Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.303e-6570.79Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.303e-6570.79Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.303e-6570.79Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304941 ID=DY304941; Name=DY304941; organism=Citrus clementina; type=EST; length=1260bp
GATCATTATCAGAGTTTCCGGTTCTACCCTTTAAATTTATCTTCAGATCT
TCGACTGAACAAGCGGTCGTCTCTAATTTTGATTTTGTTATCTTAGGATG
TATATATTATTAAAAATGGCTAGGAGACTGGAAGAGGAATACGATTAATT
GTTCGAAGTGGTATTAATCGGCGATTCCGGAGTCGGAAAATCGAATTTAC
TCTCCCGATTTACACGGATCAAGTTCTGTTTGGAGTCCAAATCCTTGATT
GGCTGCTAATTCTCTACACTCACTCGTCAAGTTGAAGGAAGGACAATCAA
AGCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCA
ATGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACG
AAGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACACAGGATGCCCTAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCGTTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAATGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCATGGGAGCCAGCTCCTTCAACATCACAGAATGAC
AGACTATCGTAGTACGATGGGCATCAGAAGCAACACATAAGACCTTGTTG
CTCTCATCCTAAGGATGGGTCTGTCTTCTTTGGTTTATCTCAATTTCTTC
CCATTTTGTCGTGTCGGGCTTCTAAGTGAAGTCTTTCATTCTCTCAATGG
GTTAATTGTAAAGCTTCGAATTATTTGTTGTTAAACATGTTAAATTTGGA
ATATTCTCCTCATTTGGTTGTGTGATAGCAGAATTACTTTTTGTTAAAAA
AAAAAAAAACAAAAAAATAAAAAAGAAAAACAGAAAAAAAAAACAACACC
CCGGGGGGGGGCCCGGACCCCCCTTCGCCCCCATGGGGAGGCCATTTAAC
AATACAAGGGCCCGCCCCTTTACAACCGTCTGGGACTGGGGAAAAAACCT
GTGTGGTTCCCCAAAACTAAATTCTCCCTTTGCCCCCAACTTCCCTCCCT
TTTCCCCCGGGGGGGGCGGGTAAGTAAAAAAAAAAGGAGGGCCCCCCAAC
CCAAGAAACCCCCCCCCCTCTTCCCCCCCACACTTTTGGGGCGCGCCCCC
CGCCCTCGGG
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