DY305064

Overview
NameDY305064
Unique NameDY305064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305064 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.439e-20
Identity = 50/139 (35.97%), Postives = 80/139 (57.55%), Query Frame = -2 
Query:  390 LGMGSAAESLRGQAYGAIEYVMLGIHERRSVALLTLTGILMTVVYVF*RAIQIILGELPDIASSAAVLVYGLIPQIEAYAMNFPIQKS*QAQSIVAPSAYRSRATLEGHLVLSWVAVYEMGLGGIGASRIMRVSWGIVV 806
            LGM SA +++ GQAYGA +Y  +GI  +R++ L     + +T +Y +   I   +G+   IA    +   G+IPQI A+A+  P+Q+  QAQ+IV P AY S      H +L+W+    +  G +GA+ I+  SW ++V
Sbjct:  107 LGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLV 245

HSP 2 Score: 29.261 bits (64), Expect = 2.439e-20
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = -3 
Query:  290 VYIVQRDRSRHTWGGFGVRAFSGLLFFFQ 376
            +YI+     + TW GF  RAF G+  +F+
Sbjct:  250 MYILMSPNCKETWTGFSTRAFRGIWPYFK 278
The following BLAST results are available for this feature:
BLAST of DY305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH2.439e-2035.97Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2AG05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305064 ID=DY305064; Name=DY305064; organism=Citrus clementina; type=EST; length=1269bp
GGCACAAGCCCAATGTTGCACGGTCTTCTGTACCCCATGCTGGGCTTTGG
TAGCGATTCGACCCGTGAACGATCTGGGATGCTCCTTTCCTGAGCCTTAA
GGGGGGAGACCTAAGATGCAATCATCGTAATCGGCGCGGTCCACGTTTGA
AAAGAATATACTTATCTGCTTCCCCTTTGGAAAAACATTCCATGTCCCAC
TCCGGAGTGGACAACTAACCTGCCACTCTACCATAGTCTGAAATTACCAC
ATCACCGATCCCACCTGCATCACTGAGGCTTCCCATACTTTGAAAAAAGA
AAAGGAGACCAGAGAAGGCCCGAACCCCAAACCCCCCCCACGTGTGCCTA
CTCCTATCTCTTTGAACAATATAAACAAACTGAGCAGATCACGACAATCC
CCCACGATACCCTCATTATCCGTGATGCGCCAATCCCCCCTAGCCCCATT
TCGTATACTGCCACCCAACTTAGCACCAAATGCCCCTCTAACGTGGCCCT
CGACCTGTATGCACTTGGAGCCACTATGCTCTGTGCTTGCTAAGATTTTT
GGATTGGGAAGTTCATGGCGTACGCCTCGATTTGGGGTATCAAGCCGTAG
ACCAAAACTGCCGCTGATGAGGCAATATCTGGCAACTCCCCTAGAATAAT
CTGAATTGCTCTCTAAAAGACGTATACAACTGTCATTAAAATCCCCGTGA
GCGTCAACAGAGCCACTGATCTTCGCTCATGTATCCCTAGCATTACATAT
TCGATCGCACCGTATGCTTGCCCACGTAATGACTCCGCGGCACTTCCCAT
TCCCAACTGTTAAACGGAGAACTTCAATATAAAACTATTAAAGTACCCCG
TGTGCGTGTGCCTATGTACTTACGTACCATGACGACGTAAGCGAAGACTT
GGATGCTGGTGTTTGCGAGGGAAGCGGCCGGCAACCCCACGGTTGCCAAC
GGGCCCAGAGAAACATTGGGGGGAACTAAACGTGGGGGTTTTTTAACCAG
TAAGCCCACAAAAGCCCGGAACCGCTTTATTGAAAAAATTACTTTTTAAT
TCCATTCCCCACTACCCCCGCCGGAAAAACTCTGCCCCAAAATGGCAAAC
CCCCAATGTTCCGGAAAAAAAAGGGGCTTTCAAAACCCCCTCCCCTTTTT
TTCCCCCGTTGTTTTGGGCCCCCCCCAACCCCCCCCCCGTGGGGGGGAGA
AAAAAAATATTCCCGCCCGGGGGAGAGAGAATACTCAAGGGAAGGGGGCG
GCGGGTTGAAAAAAAAATA
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