DY305065

Overview
NameDY305065
Unique NameDY305065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9272 contig Ccv1_Contig9272:1..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305065 vs. ExPASy Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.886e-25
Identity = 71/149 (47.65%), Postives = 95/149 (63.76%), Query Frame = -3 
Query:  292 VTTLILTFAPGVSMPSKEFLVATFSRFGPLKESETQLSNDSGIAEVVFMRGADAGEAIRSLETNNCFGPILVSYTLR----PVEGSRTPAKPADS----VSQPGEAP-PLDFIRQNLEMMTSMLKNSGDKLSPEMKAKLESEIKGLLKR 711
            +T L L F+  VSMPS++ L +TFS FGPL  SET +S +   A+V F+  ADA EA++SLE  N FG  LV++ L+     V+ +  P  P  S    V +P   P  +D +RQNL MMT+ML+ SGD LS E KAKL+SEI GLL++
Sbjct:  688 ITILFLKFSSQVSMPSRDDLTSTFSAFGPLDSSETHVSEEFSGAQVAFVSSADAIEAVKSLEKANPFGETLVNFRLQQKLITVQRNIAPRMPVISHVSPVPKPNNIPTSMDAMRQNLLMMTAMLEKSGDSLSRETKAKLKSEITGLLEK 836
The following BLAST results are available for this feature:
BLAST of DY305065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATM_ARATH3.886e-2547.65Serine/threonine-protein kinase ATM OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2AG06RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305065 ID=DY305065; Name=DY305065; organism=Citrus clementina; type=EST; length=1271bp
GAGGAGAAGACATCAGTTTTTTAATTAGAAAGGAAAAGCAAACCCAACGA
TTACAGATGATGTTCCATTGCTTGTACACTCAGTACGAGACAAGCTAAAT
GGGGGTTCTCATGCTACGACATCTGTCAACATAGAGATACAAAATAACAG
CTAATACAGACCTCAGAACCGGGAACTGTAATGATATCTAGTCTCTACTG
AAAGGGCCACTACATCAATAAACAACCTAAATAGAGAACCTACATCTTAA
AACTCTTACTAGGAAGAGGAAGAACTGGGCATGGAGCTGACCCTTTTGAG
AAGGCCTTTAATTTCACTCTCCAATTTGGCTTTCATCTCTGGAGAAAGTT
TATCCCCGGAGTTCTTTAGCATTGATGTCATCATCTCAAGATTCTGCCGT
ATGAAGTCAAGGGGAGGTGCCTCGCCAGGTTGAGAAACTGAATCGGCAGG
CTTTGCTGGAGTCCTAGATCCTTCCACAGGACGAAGAGTATAACTTACCA
GGATTGGACCAAAACAGTTATTTGTCTCTAAACTCCGAATAGCTTCTCCA
GCATCTGCACCTCTCATGAAAACAACCTCCGCGATACCCGAATCATTTGA
CAACTGTGTTTCTGATTCCTTCAAGGGCCCAAACCTGGAAAATGTTGCAA
CCAAAAATTCTTTTGAAGGCATGGAAACTCCAGGGGCAAATGTCAAGATA
AGAGTAGTCACAGAAGATTCTCCATTATTATTCCCTCTGTCGTTATTAAA
ATTTATATCTAACATCCTGGAAGCAAATTTATTACTTCGCTTGCCAGGAG
TAGCTCCCCCTTTCCTCTTCCTCTTTCTTCTCTCAGGTTTGACAAGAGGT
GAAGCACAAGGTCCAGCACTAATTTCATTTAAATCAGGTATGCCTGCAGC
AAGCATAAATTCTGGGTGGCCCAAAAAGTGATTTTGCTTTCCTTCCCCTC
CTTTTCCTCCCAGGTTTCCCTTCCCCTAAAAGTGGGGCAGCTCCTGGGGG
ATCTTTGAACCAACAATACTGGGAACAAAAAAATTTCCATTATTAAGGTT
TAAGAAAAAGAATTAATTGGCGAAGGGACCTTTTCCCCCCCCAATCCGGC
CCCAAAGGGAAAAAGAAAAAAAGAAAAAAAACTAATTCTTGGGGGGGGGG
GCCCCGGGGCCCCCATTTTCCCCCCCTTAATAAGGGGGTTCCTTAAATAA
CAAAATTTCCCGGGGGGGCCCTCGTCTTTTTTTTATAAAAACAGCCCCCC
GGGGGGAGGGGGGGGGGAGAA
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