DY305214

Overview
NameDY305214
Unique NameDY305214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1115
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305214 vs. ExPASy Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.613e-26
Identity = 88/232 (37.93%), Postives = 115/232 (49.57%), Query Frame = -3 
Query:  292 RGRKEGRESKIPFGQTENMPAAGILDLNGTSAEPGASPLVXXXXXXXXXXXXXXXXXRSNKFASRMLDIXXXXXXXXXNGESSVTTLILTFAPGVSMPSKEFLVATFSRFGPLKESETQLSNDSGIAEVVFMRGADAGEAIRSLETNNCFGPILVSYTLR----PVEGSRTPAKPADS----VSQPGEAP-PLDFIRQNLEMMTSMLKNSGDKLSPEMKAKLESEIKGLLKR 960
            RGRK     ++P          GI DLNGT+ EP    LV                   N                       +T L L F+  VSMPS++ L +TFS FGPL  SET +S +   A+V F+  ADA EA++SLE  N FG  LV++ L+     V+ +  P  P  S    V +P   P  +D +RQNL MMT+ML+ SGD LS E KAKL+SEI GLL++
Sbjct:  627 RGRKRKNAEELPI-VAHASATTGIPDLNGTNTEP---TLVLPQVEPTQRRRRRKKEESPNGLTR------------------GITILFLKFSSQVSMPSRDDLTSTFSAFGPLDSSETHVSEEFSGAQVAFVSSADAIEAVKSLEKANPFGETLVNFRLQQKLITVQRNIAPRMPVISHVSPVPKPNNIPTSMDAMRQNLLMMTAMLEKSGDSLSRETKAKLKSEITGLLEK 836
The following BLAST results are available for this feature:
BLAST of DY305214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATM_ARATH8.613e-2637.93Serine/threonine-protein kinase ATM OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DG11RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305214 ID=DY305214; Name=DY305214; organism=Citrus clementina; type=EST; length=1115bp
GAGGAGAAGAAATCAGTTTTTTAATTAGAAAGGAAAAGCAAACCCAACGA
TTACAGATGATGTTCCATTGCTTGTACACTCAGTACGAGACAAGCTAAAT
GGGGGTTCTCATGCTACGACATCTGTCAACATAGAGATACAAAATAACAG
CTAATACAGACCTCAGAACCGGGAACTGTAATGATATCTAGTCTCTACTG
AAAGGGCCACTACATCAATAAACAACCTAAATAGAGAACCTACATCTTAA
AACTCTTACTAGGAAGAGGAAGAACTGGGCATGGAGCTGACCCTTTTGAG
AAGGCCTTTAATTTCACTCTCCAATTTGGCTTTCATCTCTGGAGAAAGTT
TATCCCCGGAGTTCTTTAGCATTGATGTCATCATCTCAAGATTCTGCCGT
ATGAAGTCAAGGGGAGGTGCCTCGCCAGGTTGAGAAACTGAATCGGCAGG
CTTTGCTGGAGTCCTAGATCCTTCCACAGGACGAAGAGTATAACTTACCA
GGATTGGACCAAAACAGTTATTTGTCTCTAAACTCCGAATAGCTTCTCCA
GCATCTGCACCTCTCATGAAAACAACCTCCGCGATACCCGAATCATTTGA
CAACTGTGTTTCTGATTCCTTCAAGGGCCCAAACCTGGAAAATGTTGCAA
CCAAAAATTCTTTTGAAGGCATGGAAACTCCAGGGGCAAATGTCAAGATA
AGAGTAGTCACAGAAGATTCTCCATTATTATTCCCTCTGTCGTTATTAAA
ATTTATATCTAACATCCTGGAAGCAAATTTATTACTTCGCTTGCCAGGAG
TAGCTCCCCCTTTCCTCTTCCTCTTCTTCCTCTCAGGTTTGACAAGAGGT
GAAGCACCAGGTTCAGCACTAGTTCCATTTAAATCAAGTATGCCTGCAGC
AGGCATATTTTCTGTTTGCCCAAAAGGGATTTTGCTTTCCCTCCCCTCCT
TTCTTCCCCGGTTTCCCTCCACCAAAAAAGGGGGCACCCCCCGAGGGGAA
TTTTGAACCAAAAAAACGGGAACAAAAAAAAATTTCCATTTTTTTTTTTT
TAGGAAAAAAAAATTAATTTGGCTAAAGGGGCCTTTTCCCCCCCACAAAT
CCCGGGCACGGAGGG
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