DY305294

Overview
NameDY305294
Unique NameDY305294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1708 contig Ccv1_Contig1708:547..1776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305294 vs. ExPASy Swiss-Prot
Match: GRIP_ARATH (Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 7.206e-61
Identity = 122/232 (52.59%), Postives = 167/232 (71.98%), Query Frame = 3 
Query:   21 STRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELAAANDTEQLRXXXXXXXXXXXXMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKHQMEKEAWEKNIQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHQSLELRPADNHNDKD----STGITASQKQDVLN 704
            ST+DAEL  A++EI  L+ EFSSYKIRAHALLQKKD ELAAA D+EQ++            + LVSAE+D+A Q+LQ ALA+ +KEL ER  AL +A++QIKS+E+KLDS   ++Q EK+AWE++++ +EE+WR RCE L AQ E S  + ++KEL+  KL+ KR+K+EH+S R+LADR++EEKD EISRL+D+  NL +S+E +P  N +           T SQ+QDV N
Sbjct:  411 STKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEVYLVSAERDRAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWRRRCEALTAQNEASPAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISRLVDEMTNLRKSMESKPVWNKSPSQVHHYGNNNTESQQQDVSN 642
The following BLAST results are available for this feature:
BLAST of DY305294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GRIP_ARATH7.206e-6152.59Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BB03RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305294 ID=DY305294; Name=DY305294; organism=Citrus clementina; type=EST; length=1230bp
TGCCGAATTCGGCACGAGGAAGTACTAGAGATGCTGAACTTATGGCTGCC
AAACAAGAGATTATCCACCTTGAACGTGAATTTTCTTCTTACAAGATTCG
TGCTCATGCACTTCTCCAGAAAAAGGATGCAGAGCTAGCTGCAGCTAACG
ACACTGAACAGCTCAGAGCTCTTGAGGAAGCATTGAAAGAAACTGAAAAA
GAAATGTCCCTGGTTTCTGCAGAAAAAGATAAGGCCCTTCAAGAACTTCA
AGAGGCTTTGGCTAATCATGACAAAGAACTTGCAGAAAGAGATGCAGCTC
TGAACAATGCAAACCAGCAGATAAAGAGCATAGAGATCAAGCTTGATTCT
ATGAATACTAAACACCAAATGGAGAAAGAAGCATGGGAAAAGAACATTCA
AACTGTGGAAGAATCATGGCGACTCAGATGTGAGCTATTGAAAGCTCAAA
AAGAAGAATCTTCTGGGCAAGATGTACAAAAAGAATTACAAGAACTCAAA
CTACAGTATAAACGTCTAAAGGATGAACATGATTCATTCCGTGATCTTGC
TGATAGGATGATGGAGGAGAAGGACAATGAAATCTCTAGACTTTTGGATG
ATAATAAGAATCTTCACCAATCTCTGGAATTGAGACCAGCTGACAATCAC
AATGATAAGGACAGCACAGGCATTACAGCCTCACAGAAACAGGATGTTCT
GAATTCAATTCCCTCTGCAGCAGAGCAGCAGATTCTGCTTTTAGCGAGGC
AACAAGCACAGAGAGAGGAGGAGCTAGCACAATCACAGCGGCACATTTTG
GCACTTTCAGAGGAGCTTGAGGAGCTTGAACGTGAAAATCGTCTCCCCAG
CCCAACAGGAAGCCATGTTAAAGGAAGACCTTCCCAACAGGGAAAGATCA
AAAAAAAAAGAGGGAGGGGACCTGGACTATCCTAAAAAATGTTTTTCTTA
AAGCTTCTTGGAAACAGGGGAGGGGGGAGGCCCCTGCTCCCCGGTAATAA
CCAAGGCTTTCTTTCATTTCCGTCCCGAAAAAAAAGGAAAAAGTGGGCCA
CAAAGCCCTCCCCTTGCCCCCCACAAAACGTTTTCCCCCCCCCATCCCCC
CCCCCCGGGCAAAAAGGATTTTTTCTCCGGGAAAACACCCCCTTCCCCTC
CTTTTTTTTTCTCTTTAAATTTTTCTCCTTTTTTTTTTTCATTTATGTTG
GTGCCTCAAAAAAATAAAAAGAAACCCCCC
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