DY305367

Overview
NameDY305367
Unique NameDY305367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9288 contig Ccv1_Contig9288:1..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305367 vs. ExPASy Swiss-Prot
Match: Y6689_DICDI (Leucine-rich repeat-containing protein DDB_G0276689 OS=Dictyostelium discoideum GN=DDB_G0276689 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.139e-11
Identity = 48/187 (25.67%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:  413 QVIKKDHVAAGLSCIQLFMNS--SSQEEAIKHLENAKMHFDEGLSARVKGGDSTKLVTKGVRGKSASEKLSEEGLVKFSARVSIQVEVIKSFNDSD------GPQWRHSLFGNPNDPETFRRRCEIAETL-VEKNFNLAFQVIYEFNLPAVDIYAGVAASLAKRKKGSQLTKFFKNIKGTIDHDGWE 946
            Q+   D+V AGL+C+++F+ +   +    + HLE A  +F+ GL+  VKG                   LS+  +  +    + Q+E+ K F  S        P  + S+FG      T +++ E+ E L +  NF+L F++  E  L    IY     ++A++K  S++  +   ++G I+ + WE
Sbjct: 1870 QLYMGDNVRAGLTCVKMFLTNPEGTANSRVHHLEQALYYFNIGLTNYVKGC-----------------VLSQPEINNYIQNCTTQLEISKFFYKSSSVFPTTSPVHKLSIFG------TIKQKTELVEQLTINGNFDLGFKIAQESKLTLPPIYVNALTTMARKKMSSKIEDYLNQLRGCINPEDWE 2033
The following BLAST results are available for this feature:
BLAST of DY305367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y6689_DICDI7.139e-1125.67Leucine-rich repeat-containing protein DDB_G027668... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CE08RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305367 ID=DY305367; Name=DY305367; organism=Citrus clementina; type=EST; length=1273bp
TGCCGAATTCGGCACGAGGATTCGCTGGCAACGGATTATGGAACCATTGA
TGATCTTTGCGAGTTGTGCGTTGGCTATGGTGCAATGCCAATTTTGGAGG
AAGTGATTTCAATGAGAATCTCATCTACCAACGAACAGGATGTAGCTGTT
AATCAGCATACTGCTGCAGCCCTTGCCCGCATTTGCACCTATTGTGAAAC
TCATAAACATTTCAATTACCTATACAAGTTTCTGGTATGGATGAAGTATT
CTTATTAAATCACCCGGAATAAGAAAAGATGAAGCTTTATATTTTTTTTC
GCTGTTGAAGCATAGTATATTGATGTACCTTATATATGAGCTTTAGAATC
CTACTATTTCCCTCCATTTCTACCATATTTGTCATTGATTTACTTCAAAT
TTTCTGTCGGTTCAGGTAATTAAGAAGGACCATGTTGCTGCTGGACTTTC
CTGTATTCAATTATTTATGAACTCTTCTTCCCAGGAGGAGGCTATCAAAC
ATTTGGAAAATGCTAAGATGCATTTTGATGAAGGGCTGTCAGCTCGAGTT
AAAGGTGGAGATTCTACCAAGCTTGTCACTAAGGGTGTCAGAGGAAAAAG
TGCTTCTGAGAAACTAAGTGAAGAAGGACTTGTCAAGTTTTCTGCTCGGG
TATCAATCCAGGTGGAAGTTATAAAATCTTTTAATGATTCGGATGGACCA
CAGTGGAGACACTCTCTTTTTGGAAATCCAAATGATCCGGAAACCTTCAG
GAGGAGGTGTGAGATTGCAGAGACACTAGTGGAAAAGAATTTCAACTTGG
CTTTCCAAGTAATCTATGAATTTAATCTTCCAGCTGTTGATATATATGCT
GGTGTTGCTGCATCACTTGCTAAAAGGAAAAAAGGAAGTCAGTTGACAAA
ATTTTTTAAAAACATAAAAGGAACAATTGACCATGATGGATGGGAATTCG
GGCCCTGGGGGGCTGCAAAAAATGTATTTGCCAAATAAACCCAAAGAAAC
CCCCCTGAGCCAACTCCTTAAATGCCTAACCAACCATTCAAAAAAAAGGT
ATCGGGCTTTGGTGGTGTTTGTGGGGCCCTCTAAAAAAAGTTTCTTTTCC
ACAATTTGCTTTCCCCCAAAAGTGGAAAACCCGGGGCGGAAGTTTTTCTA
TAAAATGTAACCCCCATCCCCCGGCGTGTTAATAATGCCCAAAAAATGGC
CCCCTCCCCCCCCCGTCGGGTTTTTAAAATATAGATTTGGTAAAAAACAC
AGCAGGTGTGTTTTTGTGGCGCG
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