EG026395

Overview
NameEG026395
Unique NameEG026395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.259e-35
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  226 VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.259e-35
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.854e-35
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  213 IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.033e-35
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.573e-35
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 3
Query:   18 RVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 308
            RVLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  147 RVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.573e-35
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  231 VVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.585e-35
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  221 VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.121e-34
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 332
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  219 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.261e-34
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 323
            V+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+G +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  232 VVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of EG026395 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   21 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 305
            V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG G +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  232 VIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
The following BLAST results are available for this feature:
BLAST of EG026395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI1_TOBAC2.259e-3560.58Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_SOLTU2.259e-3559.62Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU3.854e-3557.69Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU5.033e-3558.65Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_CARPA6.573e-3562.89Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI3_TOBAC6.573e-3559.62Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_TOBAC8.585e-3559.62Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC1.121e-3458.65Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI9_ORYSJ4.261e-3460.40Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_ARATH1.619e-3364.21Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3AD09ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026395 ID=EG026395; Name=EG026395; organism=Citrus clementina; type=EST; length=489bp
CGGGTGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAATCTGGTTC
TGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGA
CGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGAT
ACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGT
GGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGG
CAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGC
CTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACG
TTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGT
CACACTTGTAGGTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAAT
TAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTC
back to top