EG026423

Overview
NameEG026423
Unique NameEG026423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG026423_ssr211 microsatellite EG026423_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:322..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            G Q  V IVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   98 GTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.328e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            G Q  V IVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   98 GTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.287e-14
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 144
            G Q+ V IVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   96 GTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.120e-13
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GAQ    IVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   98 GAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.120e-13
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GAQ    IVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   96 GAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.120e-13
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GAQ    IVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   75 GAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.769e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GA  IV IVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:   38 GANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.769e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GAQ  V IVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  149 GAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GA+  V IVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  140 GAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of EG026423 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.163e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 GAQQIVIIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 150
            GAQ  V IVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:  150 GAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
The following BLAST results are available for this feature:
BLAST of EG026423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC2.049e-1676.00Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC1.328e-1574.00Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC7.287e-1470.83Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WHW2_WHEAT2.120e-1370.59Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT2.120e-1370.59Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
BARW_HORVU2.120e-1370.59Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN_SOYBN2.769e-1366.00Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WIN2_SOLTU2.769e-1366.00Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR1.052e-1262.00Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WIN1_SOLTU1.163e-1162.00Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3BE03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026423 ID=EG026423; Name=EG026423; organism=Citrus clementina; type=EST; length=328bp
GGAGCCCAACAAATTGTGATAATTGTTGATCAGTGTGCCAATGGAGGCTT
AGATTTGGACGAAGGAGTGTTCAAGAAATTGGACACCAATGGAATAGGCT
ATCAACAAGGCTTCCTTACTGTCAGCTACGAGTTTGTGAACTGCAATGAT
TAAAGCACCATCTATAATTCCATGATCGATCGAAGCTTAATGCTGTAATA
GGGTTAATTTATTAATTAATTATCCCTCTATATACTTAGTTCATAAATAA
AATAAAACTTCTGATGAAGTATCAAGAAGTGCTCATGGGCACTACAGTTA
TGTAATAAAAGTTTCCTTTTTTTATCCG
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