EG026444

Overview
NameEG026444
Unique NameEG026444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG026444_ssr219 microsatellite EG026444_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9601 contig Ccv1_Contig9601:4..402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 2
Query:    5 AGGDGSLTNVDNARTYNNNLIQHVKQGSPKKPR-PIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNFN 223
            + G G LT++DNARTYNNNLI HVK GSPK+P  PIETY+FA+FDE D+K  EIE+H+GLF+ + QPKYQ++FN
Sbjct:  267 SAGAGQLTSIDNARTYNNNLISHVKGGSPKRPSGPIETYVFALFDE-DQKDPEIEKHFGLFSANMQPKYQISFN 339          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 47/70 (67.14%), Postives = 62/70 (88.57%), Query Frame = 2
Query:   17 GSLTNVDNARTYNNNLIQHVKQGSPKKP-RPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNFN 223
            G+ T +DNART+ +NLIQHVK+G+P++P RPIETYIFAMFDE ++K  E+E+HWGLF+P KQPKYQ++FN
Sbjct:  282 GTATTIDNARTFISNLIQHVKEGTPRRPGRPIETYIFAMFDE-NRKTPELEKHWGLFSPTKQPKYQISFN 350          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.757e-20
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2
Query:    2 TAGGDGSLTNVDNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            +AG  G+    DNA TY  NLIQH K+GSP+KPRPIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  278 SAGAFGA--TYDNAATYLKNLIQHAKEGSPRKPRPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNLNF 347          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    2 TAGGDGSLTNVDNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNFN 223
            +AGGD +     NA+TYN NLI HV QG+PK+P PIETYIFAMF+E  K G E ERH+GLF PDK P Y +NF+
Sbjct:  264 SAGGDAA--TAANAQTYNQNLINHVGQGTPKRPGPIETYIFAMFNEDQKTGAESERHFGLFNPDKSPVYPINFS 335          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 2
Query:    2 TAGGDGSLTNVDNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            +AG  G+    DNA TY  NLIQH K+GSP+KP PIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  278 SAGAFGA--TYDNAATYLRNLIQHAKEGSPRKPGPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNINF 347          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 2
Query:    2 TAGGDGSLTNVDNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            +AG  G+    DNA TY  NLIQH K+GSP+KP PIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  279 SAGAFGA--TYDNAATYLRNLIQHAKEGSPRKPGPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNINF 348          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.139e-19
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 2
Query:    2 TAGGDGSLTNVDNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            +AG  G+    DNA TY  NLIQH K+GSP+KP PIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  278 SAGAFGA--TYDNAATYLRNLIQHAKEGSPRKPGPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNLNF 347          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   35 DNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            DNA TY  NLIQH K+GSP+KP PIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  244 DNAATYLRNLIQHAKEGSPRKPGPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNLNF 304          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   35 DNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            DNA TY  NLIQH K+GSP+KP PIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  279 DNAATYLRNLIQHAKEGSPRKPGPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNLNF 339          
BLAST of EG026444 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   35 DNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDEKDKKGDEIERHWGLFAPDKQPKYQVNF 220
            DNA TY  NLIQH K+GSP+KP PIETYIFAMFDE + K  E+E+H+GLF+P+KQPKY +NF
Sbjct:  253 DNAATYLRNLIQHAKEGSPRKPGPIETYIFAMFDE-NNKNPELEKHFGLFSPNKQPKYNLNF 313          
The following BLAST results are available for this feature:
BLAST of EG026444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
E13H_TOBAC1.438e-2266.22Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_PRUPE1.438e-2267.14Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_NICPL1.757e-2064.38Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_MAIZE2.997e-2062.16Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13E_TOBAC6.678e-2063.01Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC6.678e-2063.01Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13F_TOBAC1.139e-1963.01Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E133_SOLTU1.488e-1969.35Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E132_SOLTU1.488e-1969.35Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU1.488e-1969.35Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CG07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026444 ID=EG026444; Name=EG026444; organism=Citrus clementina; type=EST; length=399bp
GACGGCAGGTGGTGACGGATCGTTAACGAATGTTGATAATGCAAGGACTT
ATAATAATAACTTGATACAGCACGTGAAGCAAGGATCACCAAAGAAGCCA
AGGCCTATTGAGACTTACATTTTTGCCATGTTTGATGAGAAGGATAAAAA
GGGAGATGAGATTGAGAGGCATTGGGGACTTTTTGCTCCAGATAAGCAGC
CTAAATACCAAGTTAATTTTAATTAATTAACCAAATCAGAGTAGCTGCAT
GCAGCAGCAGATTTGAAGTTAAATTTGTAATGGAATAAATTATTGCACAA
TATGTATTAGTAATTAAGAGTTTGCATCATCACCTTGCATTGGTGCACGA
GGCCAAATTTCATATCAATAATGTGATGGTTACGGCATTTAATTTTAAA
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