EG026703

Overview
NameEG026703
Unique NameEG026703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.408e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NL+WGVD  ALETLF EQGKV++AKV YDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  194 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273          

HSP 2 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQ 237
            NL +  D  AL  LF   G V   +V YD+ +GRSRGFGFVT SS EEV+ A    NG +L GRA+RV+ +   P++R+
Sbjct:   93 NLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRE 170          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.408e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NL+WGVD  ALETLF EQGKV++AKV YDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  200 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279          

HSP 2 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF*AVAETS 261
            NL +  D  AL  LF   G V   +V YD+ +GRSRGFGFVT SS EEV+ A    NG +L GRA+RV+ +   P++R+  +  E S
Sbjct:   93 NLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRENSSFRENS 178          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.026e-29
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NLSWGVDDLAL+ LF EQG V++AKV YDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF
Sbjct:  214 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292          

HSP 2 Score: 72.4034 bits (176), Expect = 7.906e-13
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 231
            NL + VD  AL  LF   G V   +V YD+ SGRSRGFGFVT S+ EEV+ A    NG ++ GRAIRV+   A  +R
Sbjct:   94 NLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKR 170          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.028e-28
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NLSWGVDDLAL+ LF EQG V++AKV YDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF
Sbjct:  213 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291          

HSP 2 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 231
            NL + VD  AL  LF   G V   +V YD+ +GRSRGFGFVT S+ EEV+ A    NG ++ GRAIRV+   A  +R
Sbjct:   93 NLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKR 169          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.342e-28
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NLSWGVDD+ALE+LF EQGKV+EA+V YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+
Sbjct:  210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289          

HSP 2 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 231
            NL + VD   L  LF   G V   +V YD+ +GRSRGFGFVT SS  EV+ A    NG +L GR +RV+     P+R
Sbjct:   97 NLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.701e-28
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NLSWGVDD+ALE LF EQGKV+EA+V YDR+SGRS+GFGFVT SS++EV  AI+SLNG DL GR IRVS AEARP R QF
Sbjct:  263 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342          

HSP 2 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQ 237
            NLS+ VD   L  LF   G V   +V YD+ +GRSRGFGFVT S+A EV+ A    NG +  GR +RV+     P+R +
Sbjct:  105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 183          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.217e-21
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            NL W VD+  LE LF E GKV+EA+V YDRE+GRSRGFGFVT S  +E++ AI +L+G +L GRAIRV+VAE RP RR +
Sbjct:  250 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329          

HSP 2 Score: 67.781 bits (164), Expect = 1.947e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 231
            NL++ V+  AL  LF + G V  A+V Y+RE+ +SRGFGFVT SS +E + A++  N  DL GR + V+ A  R  R
Sbjct:  156 NLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            N+ WG+DD  LE LF E GKV+ A+V YDRE+GRSRGFGFVT +S  E+ +AI +L+G  L GR IRV+VAE R +R  F
Sbjct:  236 NIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.943e-19
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 231
            NL W VD   LE LF E GKV+ A+V  DRE+GRSRGFGFVT SS  EV++AI +L+G  L GRA+RV+VAE RP+R
Sbjct:  155 NLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231          

HSP 2 Score: 67.0106 bits (162), Expect = 3.322e-11
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR--PQR 231
            NL + VD   L  +F   G V  A+V Y+RE+ RSRGFGFVT S+ EE + A++ LNG D+ GR + V+ A  R  P+R
Sbjct:   61 NLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139          
BLAST of EG026703 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.537e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 240
            N+ W +DD  LE +F E GKV+ A+V +DRESGRSRGFGFVT SS  E+  AI +L+G  L GR IRV+ AE RP+R  +
Sbjct:  197 NIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276          

HSP 2 Score: 66.6254 bits (161), Expect = 4.338e-11
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 NLSWGVDDLALETLFREQGKVLEAKVAYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 231
            NL + +D   L  LF++ G V  A+V Y+RE+ RSRGFGFVT S+ EE D A++  +  DL GR + V+ A  R  R
Sbjct:  103 NLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR 179          
The following BLAST results are available for this feature:
BLAST of EG026703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ROC1_NICSY8.408e-3182.5029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL8.408e-3182.5030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL6.026e-2978.7531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY1.028e-2878.7529 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_ARATH1.342e-2875.00Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_ARATH8.701e-2875.0029 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_ARATH1.217e-2162.5031 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY2.997e-2058.7531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL1.943e-1962.3428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY2.537e-1956.2528 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1DF06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026703 ID=EG026703; Name=EG026703; organism=Citrus clementina; type=EST; length=397bp
AACCTTTCATGGGGTGTTGATGATTTAGCTCTTGAGACTTTGTTTCGTGA
GCAAGGGAAGGTTTTGGAAGCCAAAGTGGCATATGACAGGGAGAGTGGTA
GATCGCGGGGTTTCGGGTTTGTGACTTACAGTTCTGCTGAAGAGGTTGAC
AATGCAATTGATTCCTTGAATGGCGTAGATTTGGCCGGTAGAGCAATTCG
AGTCTCGGTGGCTGAAGCAAGGCCACAAAGGCGTCAATTTTGAGCTGTGG
CAGAAACTAGTTTTCAGTTGTTTTGATTTTATCGTTAGTTATTTGTGTTG
TTATAAGGCTGCTTATCAGTGCTATCAAATCATCGGCTTCAAAGACAGAT
TCATGATTATTTGTTTTTGCATATGCGAAATGCATGTTGCCTTGTTA
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