EH406060
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 226.868 bits (577), Expect = 5.201e-59 Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDGS--EGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375 +FLRNN QFQ LR+MV SNPQILQPMLQELGKQNPQLLRLIQE+Q EFLQL+NEP +GS EGDMFDQPEQ+MPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN+GDFED Sbjct: 245 EFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 8.593e-54 Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDGSEGDM--FDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375 +FLR N QFQ LRSMV SNPQILQPMLQELGKQNPQLLRLIQE+Q EFLQL+NEP +GS+GD+ FDQP+Q+MPH++NVTP EQE+I+RLEAMGFDRA+VIEAFL+CDRNEELAANYLLE++ DFED Sbjct: 242 EFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 1.329e-46 Identity = 90/125 (72.00%), Postives = 110/125 (88.00%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375 DFLRN+QQFQALR+MVQ+NPQILQPMLQELGKQNPQL+RLIQEHQ +FL+LINEPV+G E ++ +Q E MP A+ VTP E+EAI+RLE MGFDRA+V+E F AC++NEELAANYLL++ +FED Sbjct: 254 DFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 2.593e-42 Identity = 86/129 (66.67%), Postives = 107/129 (82.95%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVD--GSEGDMFDQPEQDM--PHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375 DFLRN+QQFQALR+MVQ+NPQ+LQPMLQELGKQNP L+RLIQ+HQ +FL+LINEPV+ G G++ Q M P AI VT E+EAI+RLEAMGF+RALV+E F AC++NEELAANYLL++ +FE+ Sbjct: 291 DFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 4.140e-40 Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDG-SEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375 D LRNN QF+ L S+VQ+NPQILQP+LQELGKQNPQ+L+LIQE+Q EFL LINEP +G E ++ DQ + MP I VTP E EAI RLEAMGFDRALV++ F AC+++E+LAANYLL++ +F+D Sbjct: 263 DALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.078e-27 Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVD----------GSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 366 +FLRN QFQ +R ++Q NP +L +LQ++G++NPQLL+ I +HQ F+Q++NEPV G G + + M + I VTP E+EAI+RL+A+GF LVI+A+ AC++NE LAAN+LL+ D Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNY-IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFD 407
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.250e-27 Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVD----------GSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 366 +FLRN QFQ +R ++Q NP +L +LQ++G++NPQLL+ I +HQ F+Q++NEPV G G + + M + I VTP E+EAI+RL+A+GF LVI+A+ AC++NE LAAN+LL+ D Sbjct: 276 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNY-IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFD 406
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27 Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 372 +FLR+ QFQ +R ++Q NP +L +LQ+LG++NPQLL+ I HQ +F+Q++NEP V+G G + ++ Q + I VTP E+EAI+RL+A+GF +LVI+A+ AC++NE LAAN+LL D E Sbjct: 233 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27 Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 372 +FLR+ QFQ +R ++Q NP +L +LQ+LG++NPQLL+ I HQ +F+Q++NEP V+G G + ++ Q + I VTP E+EAI+RL+A+GF +LVI+A+ AC++NE LAAN+LL D E Sbjct: 233 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27 Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1 Query: 1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 372 +FLR+ QFQ +R ++Q NP +L +LQ+LG++NPQLL+ I HQ +F+Q++NEP V+G G + ++ Q + I VTP E+EAI+RL+A+GF +LVI+A+ AC++NE LAAN+LL D E Sbjct: 232 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362 The following BLAST results are available for this feature:
BLAST of EH406060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >EH406060 ID=EH406060; Name=EH406060; organism=Citrus clementina; type=EST; length=553bpback to top |