EH406060

Overview
NameEH406060
Unique NameEH406060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.201e-59
Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDGS--EGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375
            +FLRNN QFQ LR+MV SNPQILQPMLQELGKQNPQLLRLIQE+Q EFLQL+NEP +GS  EGDMFDQPEQ+MPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEN+GDFED
Sbjct:  245 EFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 8.593e-54
Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDGSEGDM--FDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375
            +FLR N QFQ LRSMV SNPQILQPMLQELGKQNPQLLRLIQE+Q EFLQL+NEP +GS+GD+  FDQP+Q+MPH++NVTP EQE+I+RLEAMGFDRA+VIEAFL+CDRNEELAANYLLE++ DFED
Sbjct:  242 EFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.329e-46
Identity = 90/125 (72.00%), Postives = 110/125 (88.00%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375
            DFLRN+QQFQALR+MVQ+NPQILQPMLQELGKQNPQL+RLIQEHQ +FL+LINEPV+G E ++ +Q E  MP A+ VTP E+EAI+RLE MGFDRA+V+E F AC++NEELAANYLL++  +FED
Sbjct:  254 DFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.593e-42
Identity = 86/129 (66.67%), Postives = 107/129 (82.95%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVD--GSEGDMFDQPEQDM--PHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375
            DFLRN+QQFQALR+MVQ+NPQ+LQPMLQELGKQNP L+RLIQ+HQ +FL+LINEPV+  G  G++  Q    M  P AI VT  E+EAI+RLEAMGF+RALV+E F AC++NEELAANYLL++  +FE+
Sbjct:  291 DFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.140e-40
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVDG-SEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED 375
            D LRNN QF+ L S+VQ+NPQILQP+LQELGKQNPQ+L+LIQE+Q EFL LINEP +G  E ++ DQ  + MP  I VTP E EAI RLEAMGFDRALV++ F AC+++E+LAANYLL++  +F+D
Sbjct:  263 DALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.078e-27
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVD----------GSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 366
            +FLRN  QFQ +R ++Q NP +L  +LQ++G++NPQLL+ I +HQ  F+Q++NEPV           G  G + +     M + I VTP E+EAI+RL+A+GF   LVI+A+ AC++NE LAAN+LL+   D
Sbjct:  277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNY-IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFD 407          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.250e-27
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEPVD----------GSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGD 366
            +FLRN  QFQ +R ++Q NP +L  +LQ++G++NPQLL+ I +HQ  F+Q++NEPV           G  G + +     M + I VTP E+EAI+RL+A+GF   LVI+A+ AC++NE LAAN+LL+   D
Sbjct:  276 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNY-IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFD 406          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 372
            +FLR+  QFQ +R ++Q NP +L  +LQ+LG++NPQLL+ I  HQ +F+Q++NEP         V+G  G + ++  Q   + I VTP E+EAI+RL+A+GF  +LVI+A+ AC++NE LAAN+LL    D E
Sbjct:  233 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 372
            +FLR+  QFQ +R ++Q NP +L  +LQ+LG++NPQLL+ I  HQ +F+Q++NEP         V+G  G + ++  Q   + I VTP E+EAI+RL+A+GF  +LVI+A+ AC++NE LAAN+LL    D E
Sbjct:  233 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of EH406060 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 DFLRNNQQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHQTEFLQLINEP---------VDGSEGDMFDQPEQDMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFE 372
            +FLR+  QFQ +R ++Q NP +L  +LQ+LG++NPQLL+ I  HQ +F+Q++NEP         V+G  G + ++  Q   + I VTP E+EAI+RL+A+GF  +LVI+A+ AC++NE LAAN+LL    D E
Sbjct:  232 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQ--MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362          
The following BLAST results are available for this feature:
BLAST of EH406060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23A_ARATH5.201e-5988.98Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH8.593e-5479.53Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23D_ARATH1.329e-4672.00Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.593e-4266.67Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ4.140e-4064.29Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_HUMAN3.078e-2745.45UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN5.250e-2745.45UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_MOUSE8.954e-2745.86UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23A_HUMAN8.954e-2745.86UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN8.954e-2745.86UV excision repair protein RAD23 homolog A OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AB05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406060 ID=EH406060; Name=EH406060; organism=Citrus clementina; type=EST; length=553bp
GACTTCCTCAGAAACAATCAACAGTTTCAAGCATTGCGTTCAATGGTGCA
ATCAAATCCGCAAATTTTGCAGCCCATGCTTCAGGAGCTTGGAAAACAGA
ACCCTCAGTTATTAAGATTAATCCAAGAGCACCAGACAGAGTTCCTTCAG
TTAATAAATGAGCCTGTTGATGGTTCTGAAGGAGATATGTTTGATCAGCC
TGAGCAAGACATGCCTCATGCAATTAATGTTACCCCAGCCGAACAGGAAG
CTATCCAACGACTTGAAGCAATGGGGTTCGATAGAGCCCTTGTCATTGAG
GCGTTTTTGGCATGTGATCGTAACGAGGAATTGGCAGCTAACTACCTATT
GGAAAATGCTGGAGATTTCGAGGATTGAGCCGATGAACATAATTTCCCAT
CGGCTTCATAGTTTTGATTTCTTTTTCTTTTTCTTTTTTTATAGATAAAT
TTCTAATTTTTTTTCCTGGGCATCTTTACTTGAGTAGTGTCTGGATTTAT
TAATTAATTGAGTCCGACGATAAAGCCTGGTAATTAATTTATAGTTTTCG
GAT
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