EH406061

Overview
NameEH406061
Unique NameEH406061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.311e-46
Identity = 89/101 (88.12%), Postives = 97/101 (96.04%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 303
            AHGTVT HYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  310 AHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 4.981e-46
Identity = 88/102 (86.27%), Postives = 98/102 (96.08%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT H+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAAC+G VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  311 AHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.449e-45
Identity = 90/102 (88.24%), Postives = 97/102 (95.10%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVANDLRARL 303
            AHGTVT HYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVA++L+ARL
Sbjct:  310 AHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.472e-45
Identity = 86/102 (84.31%), Postives = 97/102 (95.10%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT H+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAAC+G VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  331 AHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.244e-29
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  308 AHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.244e-29
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  308 AHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.533e-29
Identity = 65/104 (62.50%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGS--KMTREHYLNTEEFIDAVANDLRARLS 306
            +HGTVT H+R HQKG ETSTNSIASIFAW+RGL +RAKLDNN +LL F   LEA+C+  VESG MTKDLA+ + GS   + R  YLNTEE+I+ VA  L ++L+
Sbjct:  307 SHGTVTRHFREHQKGRETSTNSIASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAELLVSKLT 410          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.438e-29
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  308 AHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.438e-29
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  308 AHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EH406061 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.043e-27
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 AHGTVTLHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 306
            AHGTVT HYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L+
Sbjct:  308 AHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
The following BLAST results are available for this feature:
BLAST of EH406061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC1.311e-4688.12Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN4.981e-4686.27Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU1.449e-4588.24Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA2.472e-4584.31Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_MICOH3.244e-2962.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME3.244e-2962.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_DICDI5.533e-2962.50Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHC_RAT9.438e-2962.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE9.438e-2962.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_SHEEP1.043e-2760.19Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AE06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406061 ID=EH406061; Name=EH406061; organism=Citrus clementina; type=EST; length=551bp
GCCCATGGAACAGTCACCCTACACTACAGAGTTCATCAGAAAGGTGGTGA
AACTAGCACAAACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGCTTG
CACATAGGGCGAAGTTGGACAACAATGCTAGGCTATTGGATTTTACTGAG
AAACTAGAAGCTGCATGTGTTGGCACTGTTGAATCTGGGAAGATGACCAA
GGATCTTGCACTTATTATCCATGGATCTAAGATGACTAGGGAACACTATC
TGAATACTGAAGAGTTCATTGATGCTGTGGCCAACGATCTAAGAGCAAGA
CTCTCTGGCAAAGCATGATTTTTTTGTTGCAGATGCTACACATTCAAAGG
TAAAGACTTGGGGAAGCTTCCCTTGGTTATCTTTTTCATATTATGCTGAG
AAGAAATAATTGAAGAGGGGAAAATTGGGGATTGGGATTTGGTTCTCTTC
TAATTCCTACAATAGACTGCTTTCCTGTTGATCGACAAACTCTCATTTTC
ATGCAAGCAAATGTCTTGAACATGGCTTGTTATAAACAAAACTATTGCTG
A
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