EH406074

Overview
NameEH406074
Unique NameEH406074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.064e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 3
Query:   66 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 302
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.064e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 3
Query:   66 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 302
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.064e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 3
Query:   66 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 302
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.064e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 3
Query:   66 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 302
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_DICDI (Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.295e-25
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 3
Query:   72 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 302
            SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG +  KLD ILLNGN++ +LVPGG
Sbjct:   14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDNILLNGNHVCLLVPGG 90          
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_SCHPO (U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe GN=lsm5 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 3
Query:   78 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 311
            +LP ELID+CIGS +WVIMK ++E  GTL GFD YVN+VL+DVTEY+ T  G    K  ++LLNGN + +L+PGG P+
Sbjct:    5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGNGMCMLIPGGKPE 80          
BLAST of EH406074 vs. ExPASy Swiss-Prot
Match: LSM5_YEAST (U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae GN=LSM5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 3
Query:   75 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQ----ILLNGNNIAILVPGGSPDP 314
            ++LP E+ID+ I  K+ ++++ ++E  GTL GFD +VN++LED  E+ I  E   R  K+ Q    +LL+GNNIAILVPGG   P
Sbjct:    5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGKKTP 89          
The following BLAST results are available for this feature:
BLAST of EH406074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LSM5_PONAB1.064e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Pongo ... [more]
LSM5_MOUSE1.064e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Mus mu... [more]
LSM5_HUMAN1.064e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Homo s... [more]
LSM5_BOVIN1.064e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Bos ta... [more]
LSM5_DICDI2.295e-2568.83Probable U6 snRNA-associated Sm-like protein LSm5 ... [more]
LSM5_SCHPO1.593e-1857.69U6 snRNA-associated Sm-like protein LSm5 OS=Schizo... [more]
LSM5_YEAST7.658e-1345.88U6 snRNA-associated Sm-like protein LSm5 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3AG09ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406074 ID=EH406074; Name=EH406074; organism=Citrus clementina; type=EST; length=564bp
GGGGAAAAGGCAAAAGCCATCCAAAAGTCCTCCAATCGCTCTCGCTTACT
CACGGCATGGTTCACAATCCTTCGCAGCTCCTCCCATCAGAGCTAATAGA
CAGATGCATAGGGTCCAAAATTTGGGTGATAATGAAAGGAGACAAGGAGC
TTGTTGGCACTCTTAAAGGATTTGACGTCTACGTCAACATGGTCCTTGAA
GACGTCACCGAATATGAAATCACTGCTGAAGGTAGACGGATTACAAAGCT
TGATCAGATTTTGCTCAACGGAAACAACATTGCTATACTTGTTCCCGGTG
GCTCACCTGATCCAGAATAAGGGTGTGGACTCTACCTCAGTTTTAACGAG
GTCTAGTCCACTGAGATCTGTTTTATTGTCACCAATTTTACTTTAAAATT
CTGTAGGTGACATGCCTCTCGGCTGGAGTATTAAATTAGGATGAATTATG
TTTCACCTAACTGAAAATGCTATTTAGTAGATGGTTTTAATAATCGCTTA
TGTGGAAATGTGTAACTGTTTGTGTTGCTCCTAATGAAATTCGAGTAACT
AAATTAAATTAAAC
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