EH406205

Overview
NameEH406205
Unique NameEH406205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10020 contig Ccv1_Contig10020:10..488. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EH406205 vs. ExPASy Swiss-Prot
Match: Y1815_ARATH (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 2 
Query:  170 ACFPSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAE 352
            +CF  P  EPIL EALKEP+AF+GGMFAGLLRLDLN++PLKDWVTRTVEA+GITEEE+ A+
Sbjct:   48 SCFNLP-QEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDAD 107
The following BLAST results are available for this feature:
BLAST of EH406205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1815_ARATH1.164e-2077.05UPF0426 protein At1g28150, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CH08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406205 ID=EH406205; Name=EH406205; organism=Citrus clementina; type=EST; length=479bp
GAAAACAATGGCTCAATCTCTCAACAATTCTCCTTCATGTACACTGTATC
AAATAAGGAATCCAAGACAAAACTCATTTCCACCGCCATCATCATTATTG
CTTAAACGCAGCAGTTGTTCTAGTTTAAGATTAAGGAGTAATAATTATAG
AAACAAAAATGGTGTGAGAGCGTGTTTCCCCAGTCCCATCGATGAACCCA
TCCTCAAAGAAGCTCTTAAGGAGCCGGTTGCCTTCGTGGGCGGCATGTTT
GCCGGTCTTCTAAGGCTTGATTTGAACGATGATCCACTGAAGGACTGGGT
TACAAGAACAGTGGAAGCCGCTGGAATTACAGAAGAAGAAATCAAAGCTG
AAGACTCAAAATCCGATGAAGAAGTTCCAGAACAGATAGAGATTGAATGA
TGAGATTTTGGTCCTCCCTGTTTCATATTTATCTATCTGCATTCGGTCAT
TGCAACTATACATTAACGTACTGAATAAA
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