EH406238

Overview
NameEH406238
Unique NameEH406238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406238 vs. ExPASy Swiss-Prot
Match: TOM7A_ARATH (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.345e-21
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 2
Query:   92 MGSRVTLRT---KGKGVKGAKASEEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 307
            M S ++L+    KGKG KGA +S++KS  D  KEW+ W++KKAKVVTHYGFIPL+I +GMNSDPKP ++QLLSPV
Sbjct:    1 MESTISLKVNKGKGKGSKGASSSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75          
BLAST of EH406238 vs. ExPASy Swiss-Prot
Match: TOM7A_SOLTU (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  110 LRTKGKGVKGAKASEEK----SMVDSF-KEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 307
            L+ KGK  K A A++E     ++V  F KEW TWT KKAKV+THYGFIPL+IIIGMNS+PKP + QLLSPV
Sbjct:    2 LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72          
BLAST of EH406238 vs. ExPASy Swiss-Prot
Match: TOM7B_ARATH (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana GN=TOM7-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   92 MGSRVTLRTKGK-----GVKGAKASEEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 307
            M ++ TL+ KGK     G   + +S   S    FK+W+ W+++KAKV THYGFIPLIIIIGMNSDPKP ++ LLSPV
Sbjct:    1 MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77          
The following BLAST results are available for this feature:
BLAST of EH406238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOM7A_ARATH1.345e-2162.67Mitochondrial import receptor subunit TOM7-1 OS=Ar... [more]
TOM7A_SOLTU1.178e-1763.38Mitochondrial import receptor subunit TOM7-1 OS=So... [more]
TOM7B_ARATH2.010e-1754.55Mitochondrial import receptor subunit TOM7-2 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BA05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406238 ID=EH406238; Name=EH406238; organism=Citrus clementina; type=EST; length=530bp
GAATCACGGTTGTCGCTTCTCAGTCGCTAAAGCCTCCTCTCAACACAACG
TTCAATCCGTTCACCGCAGCAGGTCAAGATTTGAGGAGAAAATGGGTTCT
AGAGTAACACTTAGGACCAAAGGCAAGGGCGTGAAGGGAGCAAAGGCATC
AGAGGAGAAATCAATGGTCGATTCTTTCAAAGAGTGGAGCACTTGGACCA
TGAAAAAGGCTAAAGTGGTCACTCACTATGGATTTATTCCTCTTATCATC
ATTATCGGCATGAATTCTGATCCCAAGCCCCAAGTCTATCAGCTCCTCAG
CCCCGTTTGATCTCCATACTTGACTCTTCCTTTTCTTTTGATGTCAAACA
AAATAGTTATTATCATGCTGTGCCTTCCTATTTGTCGAATCTACATGAAT
TGAATGTTTTAGGAGTTTTGGTTTCTTGTGATCGTACTTCCTGCCTAGTT
GTAAGCTTATGGATTGACTAGTATAAAATGTCTGGAATTTGAATTATATA
CCATCTCCATTGAATTGGAGGCTTCTTTTC
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