EH406298

Overview
NameEH406298
Unique NameEH406298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14478 contig Ccv1_Contig14478:490..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406298 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.742e-20
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 3
Query:    3 GDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 140
            GD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQ
Sbjct:  147 GDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQ 192          

HSP 2 Score: 50.8322 bits (120), Expect = 2.742e-20
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  139 RIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 285
            +IF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  192 QIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of EH406298 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.742e-20
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 3
Query:    3 GDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 140
            GD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQ
Sbjct:  147 GDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQ 192          

HSP 2 Score: 50.8322 bits (120), Expect = 2.742e-20
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  139 RIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 285
            +IF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  192 QIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of EH406298 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.688e-15
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 3
Query:    6 DPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 140
            D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER Q
Sbjct:  147 DLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQ 191          

HSP 2 Score: 46.9802 bits (110), Expect = 1.688e-15
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  139 RIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 282
            +I+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:  191 QIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238          
BLAST of EH406298 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.056e-14
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 3
Query:   30 AFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQ 140
            A D LE  L KFDDGPFFLGQFS  D+AY+  +ER Q
Sbjct:  155 ALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQ 191          

HSP 2 Score: 46.595 bits (109), Expect = 1.056e-14
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 1
Query:  124 LLRDSRIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 282
            +L   +I+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:  186 ILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238          
The following BLAST results are available for this feature:
BLAST of EH406298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ2.742e-2067.39Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI2.742e-2067.39Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ1.688e-1557.78Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE1.056e-1464.86Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AA06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406298 ID=EH406298; Name=EH406298; organism=Citrus clementina; type=EST; length=460bp
AAGGAGACCCAGCAAAACAAGCTGGTCCTGCTTTTGATTACTTAGAGAAG
GCCCTTGATAAATTTGATGATGGCCCGTTCTTCCTTGGACAGTTCAGTCA
GGTGGACATAGCCTATATTCCATTTGTTGAGAGATTCCAGAATCTTCTTA
TCAGAAGAATTTAAGTATGACATCACTGCAGGCAGGCCTAAACTGGCAGC
ATGGATTGAGGAGTTGAACAAGCTCGATGCTTACAAGTCAACAAAAGCAG
ATCCAAAAGAACTCGTTGAATTTTACAGGAGCCGCTTCGTGGCCAAGCAG
TGAACCTGCAATCAGTCGTCTTAGAAGCGCACTGAATCAGTTGGTGGCGT
GGTTTGTAAAATCTCGTATAATAAAGCTGCGCGTTATACGCATTACATAT
TGTTTGCCGATGTGAGCTTGTGTACGTTGCTGGATATTGAATGAGTTGAT
GACTTGTTGA
back to top