FC868512

Overview
NameFC868512
Unique NameFC868512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 2
Query:  284 LLQNRMLETK-KAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            L+ NR L  K +AA + +   +  A  A++  + WYG +R +WLGP   + P+YLTGE PGDYG+D AGLS DP  F+KY   E++HARWA+LGALG L PE+L       F EPVW++ G        LDYLG
Sbjct:    5 LISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLG 138          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  353 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            AR   +  LWYG +R ++LGP     PSYL GE PGDYG+D AGLS DP AF K    E++H RWAMLGALG + PEVL+      F EPVW++ G        LDYLG
Sbjct:   38 ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLG 146          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            ES+WYG +RP++LGP     PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G    Q   LDYLG
Sbjct:   45 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGSQIFQEGGLDYLG 146          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S+WYGE+RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S+WYGE+RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S+WYGE+RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLG 147          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            +S+WYGE+RP++LGP     PSYLTGE PGDYG+D AGLS DP  F +    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLG 119          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 2
Query:  287 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            L+ R    +K  + D         +A  +S+WYG +RP++LGP     PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   17 LKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV-QFGEAVWFKAGAQIFSEGGLDYLG 146          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 64/144 (44.44%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  248 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            A KA+ N P   L+ +  +  +K A        A A+Q  + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E  W++ G        LDYLG
Sbjct:   14 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAGWFKAGSQIFSDGGLDYLG 148          
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  344 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679
            KA+A+ A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G   F E VW++ G        LDYLG
Sbjct:   37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147          
The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2_CHLMO1.922e-2947.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.989e-2652.29Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_SILPR2.598e-2655.34Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB24_SOLLC3.394e-2653.40Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC3.394e-2653.40Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB26_PETSP4.432e-2653.40Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC4.432e-2653.40Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI4.432e-2645.80Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_WHEAT5.788e-2644.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_SOLLC7.560e-2651.79Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31001C09EF AbioticL1 Citrus clementina cDNA clone C31001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bp
GAATTTAGATAAGTGAAAAAAGAAACTTGCTGCCATGGCTCTAATTCAAT
TTCAGGCGCATGCAACGGAGGATTGGCTTTCATGGAGTTGTTGTTCGAGC
TCGAGTGGAGGATGCTCGCTCAGGAAGATGTTAGCCCTGAAACCTTCACG
AAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAGTCTGCAAAGCATCGT
GGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCAATACCCTTCACGGCT
GTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATTGCTCCAAAACAGAAT
GTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTTCCAAGTTCAAAGCCT
TGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTATGGAGAAGAGAGGCCT
CGATGGCTTGGTCCCATTCCGTATGACTATCCTTCATATCTTACCGGAGA
GCTACCTGGGGATTATGGCTTTGATGTTGCTGGTCTGAGCAAGGATCCTA
TGGCTTTCCAGAAATACTTCAACTTTGAAATACTTCATGCTCGTTGGGCC
ATGCTTGGAGCCCTTGGTGCTCTAGTTCCAGAAGTTTTAGATATGGTAGG
AGCCTTCCACTTTGTTGAGCCTGTCTGGTGGCGTGTTGGATACTCAAAGC
TCCAGGGAGAGACCCTGGACTACCTTGGTATCCAGGTCTCCATTTAGCTG
GAAGCCAGGGAGTATGTCATTGCTATT
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