FC868517

Overview
NameFC868517
Unique NameFC868517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5909 contig Ccv1_Contig5909:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY2_ARATH (Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.035e-85
Identity = 155/194 (79.90%), Postives = 171/194 (88.14%), Query Frame = 3
Query:  129 RGRLAVLTAHLASTES----NQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            + RLAVLTAHLA +++         I PWCTSA     P G+LKG+LT+VDERTGK+YQ+PVS+ GTVKA D KKITTGK+DKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESS+F+EVAYLLMYGNLPS+SQL DWEF VSQHSAVPQG+LDIIQ+MPHDAHPMGVLVSAMSALSIFHPDA
Sbjct:    8 KARLAVLTAHLAVSDTVGLEQVLPAIAPWCTSAHITAAPHGSLKGNLTIVDERTGKKYQVPVSEHGTVKAVDLKKITTGKDDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSTFIEVAYLLMYGNLPSQSQLADWEFTVSQHSAVPQGVLDIIQSMPHDAHPMGVLVSAMSALSIFHPDA 201          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY3_ARATH (Citrate synthase 3, peroxisomal OS=Arabidopsis thaliana GN=CSY3 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.145e-84
Identity = 153/190 (80.53%), Postives = 170/190 (89.47%), Query Frame = 3
Query:  129 RGRLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            R RLAVL+ HL+  + +    IE WCTSA + V P G+LKG+LT+VDERTGK Y++PVS +GTVKA DFKKI TGK DKGLKLYDPGYLNTAPVRSSI YIDGDEGILRYRGYPIEE+AE+S+FLEVAYLLMYGNLPSESQL+DWEFAVSQHSAVPQG+LDIIQ+MPHDAHPMGVLVSAMSALSIFHPDA
Sbjct:    8 RARLAVLSGHLSEGKQDSPA-IERWCTSADTSVAPLGSLKGTLTIVDERTGKNYKVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPIEEMAENSTFLEVAYLLMYGNLPSESQLSDWEFAVSQHSAVPQGVLDIIQSMPHDAHPMGVLVSAMSALSIFHPDA 196          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CYSZ_CUCMA (Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.653e-83
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 3
Query:   90 MAPSVESSSAVTARGRLAVLTAHLASTESN---QGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            M   +E S +  AR RLAVL AHL++           +E  C SAQ+MV PP  +KG+LT+VDERTGKRYQ+ VS+EGT+KATD KKITTG NDKGLKLYDPGYLNTAPVRSSI YIDGD GILRYRGYPIEELAESS+++EVAYLLMYGNLPS+SQL DWEFA+SQHSAVPQG++DIIQAMPHDAHPMGVLVSAMSALS+FHPDA
Sbjct:    1 MPTDMELSPSNVARHRLAVLAAHLSAASLEPPVMASSLEAHCVSAQTMVAPPELVKGTLTIVDERTGKRYQVQVSEEGTIKATDLKKITTGPNDKGLKLYDPGYLNTAPVRSSISYIDGDLGILRYRGYPIEELAESSTYVEVAYLLMYGNLPSQSQLADWEFAISQHSAVPQGLVDIIQAMPHDAHPMGVLVSAMSALSVFHPDA 206          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY1_ARATH (Citrate synthase 1, peroxisomal OS=Arabidopsis thaliana GN=CSY1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.038e-77
Identity = 140/192 (72.92%), Postives = 161/192 (83.85%), Query Frame = 3
Query:  126 ARGRLAVLTAHLASTESNQGR-LIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            AR RLAVL AHL  +E NQ    IEPWCTSA     P G+LKG+L +VDERTG  YQ+PVS+ GTVK  D KKITTGK+DKGL LYDPGYLNTAPVRSSI YIDGDEGILRYRGYP+EELAE S++ EV YLL+YGNLPS+ QL DWEFA+SQ+SAVPQG+LD+IQ+MP+D HP+G LV+AMSALSIF+PDA
Sbjct:    7 ARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDA 198          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISYC_DICDI (Citrate synthase OS=Dictyostelium discoideum GN=gltA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 80/151 (52.98%), Postives = 112/151 (74.17%), Query Frame = 3
Query:  246 KGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            K +LTV+D RTGK Y+IP++ E TVK+ DF+ I     D G  +YDPGY NTA  +S I YIDGD GIL YRGYPIE+LAE SSFLEV+YLL+YG+LPS+ Q   W   +  H+ + + ++ ++++  +DAHPMG+L+S++SA+S F+P+A
Sbjct:   16 KNTLTVIDNRTGKSYEIPINHE-TVKSIDFRAIKEQSIDFGTMIYDPGYYNTAVCKSQITYIDGDRGILEYRGYPIEQLAEKSSFLEVSYLLIYGDLPSKEQSNLWNTKIMNHTFIHENLISMMKSFRYDAHPMGMLISSLSAMSTFYPEA 165          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISYP_DICDI (Citrate synthase, peroxisomal OS=Dictyostelium discoideum GN=cshA PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.767e-41
Identity = 86/188 (45.74%), Postives = 122/188 (64.89%), Query Frame = 3
Query:  135 RLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            R+ +L  HL+  E  +  L+    TS  S        K ++TV D R GK Y   +  + T+ A +FK++   K D GL +YDPG+ NTA V S I YIDGD+GILRYRGYPIEELAE S+FLEVAYLL+ GNLP++SQL  W   +  H+ + + ++ +++   +DAHPMG+L+S ++AL  F+P+A
Sbjct:    6 RINILANHLSKEEEEENELL----TSPVSA----DKKKETVTVTDNRNGKSYDFKIKND-TINALNFKELQLAKGDGGLMIYDPGFQNTAVVTSYITYIDGDKGILRYRGYPIEELAERSNFLEVAYLLINGNLPNKSQLDGWSNKIMTHTFLHENLVGLMKTFRYDAHPMGMLISTVAALGTFYPEA 184          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_BRAJA (Citrate synthase OS=Bradyrhizobium japonicum GN=gltA PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  282 KRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA 698
            K Y +P+   G+V   D   I       GL  YDPG+ +TA  +S I YIDGD G+L YRGYPIE+LAE+  FLE  YLL+YGNLP+ +Q  D++  V  H+ V + +    Q    DAHPM V+V+++ AL+ F+ D+
Sbjct:   17 KNYDLPI-HSGSV-GPDVIDIGKLYGQSGLFTYDPGFTSTASCQSKITYIDGDAGVLEYRGYPIEQLAENGDFLETCYLLLYGNLPTAAQKKDFDDRVIHHTMVHEQMARFFQGFRRDAHPMAVMVASVGALAAFYHDS 153          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICCA (Citrate synthase (Fragment) OS=Rickettsia canadensis GN=gltA PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 59/139 (42.45%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  279 GKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            GK +++P+ +       D   I+   ++     YDPG+++TA  RS+I YIDGD+GILRYRGY I++LA+ S FLEVAYLL+YG LPS  Q  ++   V+ HS V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   11 GKIFKLPILKASI--GEDVIDISRVSSEADCFTYDPGFMSTASCRSTITYIDGDKGILRYRGYDIKDLADKSDFLEVAYLLIYGELPSSEQYNNFTKKVAVHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICBR (Citrate synthase OS=Rickettsia bellii (strain RML369-C) GN=gltA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 53/106 (50.00%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            YDPG+++TA  RS+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LP+  Q  D+   V+ H+ V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   48 YDPGFMSTASCRSTITYIDGDQGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPNNKQYNDFTKKVAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 153          
BLAST of FC868517 vs. ExPASy Swiss-Prot
Match: CISY_RICBE (Citrate synthase (Fragment) OS=Rickettsia bellii GN=gltA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 53/106 (50.00%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  378 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 695
            YDPG+++TA  RS+I YIDGD+GILR+RGY I++LAE S FLEVAYLL+YG LP+  Q  D+   V+ H+ V + +  + Q     +HPM ++++A+ +LS F+PD
Sbjct:   42 YDPGFMSTASCRSTITYIDGDQGILRHRGYDIKDLAEKSDFLEVAYLLIYGELPNNKQYNDFTKKVAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLSAFYPD 147          
The following BLAST results are available for this feature:
BLAST of FC868517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CISY2_ARATH1.035e-8579.90Citrate synthase 2, peroxisomal OS=Arabidopsis tha... [more]
CISY3_ARATH1.145e-8480.53Citrate synthase 3, peroxisomal OS=Arabidopsis tha... [more]
CYSZ_CUCMA1.653e-8374.76Citrate synthase, glyoxysomal OS=Cucurbita maxima ... [more]
CISY1_ARATH1.038e-7772.92Citrate synthase 1, peroxisomal OS=Arabidopsis tha... [more]
CISYC_DICDI1.849e-4252.98Citrate synthase OS=Dictyostelium discoideum GN=gl... [more]
CISYP_DICDI7.767e-4145.74Citrate synthase, peroxisomal OS=Dictyostelium dis... [more]
CISY_BRAJA8.337e-2744.60Citrate synthase OS=Bradyrhizobium japonicum GN=gl... [more]
CISY_RICCA3.168e-2642.45Citrate synthase (Fragment) OS=Rickettsia canadens... [more]
CISY_RICBR1.204e-2550.00Citrate synthase OS=Rickettsia bellii (strain RML3... [more]
CISY_RICBE1.204e-2550.00Citrate synthase (Fragment) OS=Rickettsia bellii G... [more]

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Properties
Property NameValue
Genbank descriptionC31001D05EF AbioticL1 Citrus clementina cDNA clone C31001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868517 ID=FC868517; Name=FC868517; organism=Citrus clementina; type=EST; length=699bp
GAAATTCATTTATTCAATTTGTATTCACTCATTCATCAACCGAATCAATT
GGACTAGAGCTCGTTTTATCTAGTTTTGCTTCAAAAACAATGGCGCCAAG
CGTAGAATCATCGTCGGCCGTTACAGCTCGTGGGCGGTTGGCCGTACTGA
CAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCATCGAGCCA
TGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGG
CAGCTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTG
TCTCTCAGGAAGGCACCGTTAAAGCCACCGACTTCAAGAAGATAACAACA
GGAAAGAACGACAAGGGTTTGAAACTGTATGATCCGGGGTACTTGAACAC
GGCGCCTGTGAGATCATCAATTTGTTATATTGATGGAGATGAGGGTATCC
TTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCTTTC
TTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCA
GCTGACAGACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGG
GAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACACCCTATGGGA
GTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCA
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