FC868570

Overview
NameFC868570
Unique NameFC868570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 6.678e-64
Identity = 116/152 (76.32%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  149 MDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLRLLRKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASIQK 604
            MD AEL+ EQVLKRDIPWETYM TKL+S  GLQLLRRYD + ES RAQLLD+DGP+YV +FVSILRDI+KEETVEYVLALI EML+ANP RARLFHD+SLA+EDTYEPFLRLL KGNWFIQEKSCKILA I+SARPK  +    NG   + K
Sbjct:    1 MDQAELSIEQVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNGIDDVLK 152          

HSP 2 Score: 33.8834 bits (76), Expect = 6.678e-64
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  633 KILVEWLCAQLKKPSH 680
            K LVEWLCAQLK+PSH
Sbjct:  152 KGLVEWLCAQLKQPSH 167          
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.527e-62
Identity = 114/153 (74.51%), Postives = 129/153 (84.31%), Query Frame = 2
Query:  149 MDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLRLLRKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASIQKA 607
            MDHAELTTEQVLKRDIPWE+YM  KLISGT LQLLRRYD++ ES R  LLD+DGPSYVRVF++ILR+I KE+TVEYVLALIDEML  NPKRA LF+D SL+ ED Y+PFLRLL KGNWF+QEKSCKIL  I+SARPK Q+    NGEAS  K+
Sbjct:    1 MDHAELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKS 153          

HSP 2 Score: 28.4906 bits (62), Expect = 2.527e-62
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  639 LVEWLCAQLKKPSH 680
            LV+WLC+QL+ P+H
Sbjct:  165 LVDWLCSQLRNPTH 178          

HSP 3 Score: 21.1718 bits (43), Expect = 2.527e-62
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  595 NSKSKSTTIDDVLK 636
            NSKSK T+  DVL+
Sbjct:  150 NSKSKLTSTQDVLR 163          
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_HUMAN (V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 34/126 (26.98%), Postives = 74/126 (58.73%), Query Frame = 2
Query:  176 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEP-FLRLLRKGNWFIQEKSCKILASIVS 547
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L ++D+ML  N +R  +F D +  S++T  P FL +L + + F    + +I+A + +
Sbjct:   25 EVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHICKEQTVQYILTMVDDMLQENHQRVSIFFDYARCSKNTAWPYFLPMLNRQDPFTVHMAARIIAKLAA 150          
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_MOUSE (V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 34/126 (26.98%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  176 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEP-FLRLLRKGNWFIQEKSCKILASIVS 547
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L ++D+ML  N +R  +F D +  S+ T  P FL +L + + F    + +I+A + +
Sbjct:   25 EVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSEDKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAA 150          
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_MANSE (V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 35/147 (23.81%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  131 LSILASMDHAELTTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLRLLRKGNWFIQEKSCKILASIVSARPKPQDR 571
            + ++A+    ++   ++ +  I W++Y+  ++I+      +   D R +     L D +  +   VF+++L  I K+ T++Y+L LID++L+ +  R ++F +    S + ++PFL LL + + F+Q  + +I+A +    P+  D+
Sbjct:   21 IDMIAATSVLQIRASEIRQTQINWQSYLQGQMITQRDHDFIVNLDQRGQK---DLPDKNPDACADVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKY-SGNIWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK 163          
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_BOVIN (V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 33/126 (26.19%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  176 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDT-YEPFLRLLRKGNWFIQEKSCKILASIVS 547
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L L+D+ L  N +R  +F D +  S++T +  FL +L + + F    + +I+A + +
Sbjct:   25 EVRANKVNWQSYLQGQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTLVDDTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMAARIIAKLAA 150          
BLAST of FC868570 vs. ExPASy Swiss-Prot
Match: VATH_PIG (V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 32/126 (25.40%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  176 QVLKRDIPWETYMTTKLISGTGLQLLRRYD-NRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDT-YEPFLRLLRKGNWFIQEKSCKILASIVS 547
            +V    + W++Y+  ++IS    + ++R++  RS   + ++L  +G    + F++++  I KE+TV+Y+L ++D+ L  N +R  +F D +  S++T +  FL +L + + F    + +I+A + +
Sbjct:   25 EVRANKVNWQSYLQGQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMAARIIAKLAA 150          
The following BLAST results are available for this feature:
BLAST of FC868570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VATH_ARATH6.678e-6476.32V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_ORYSJ2.527e-6274.51Probable V-type proton ATPase subunit H OS=Oryza s... [more]
VATH_HUMAN2.010e-1226.98V-type proton ATPase subunit H OS=Homo sapiens GN=... [more]
VATH_MOUSE3.429e-1226.98V-type proton ATPase subunit H OS=Mus musculus GN=... [more]
VATH_MANSE9.977e-1223.81V-type proton ATPase subunit H OS=Manduca sexta PE... [more]
VATH_BOVIN9.977e-1226.19V-type proton ATPase subunit H OS=Bos taurus GN=AT... [more]
VATH_PIG1.702e-1125.40V-type proton ATPase subunit H OS=Sus scrofa GN=AT... [more]
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Properties
Property NameValue
Genbank descriptionC31002A07EF AbioticL1 Citrus clementina cDNA clone C31002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868570 ID=FC868570; Name=FC868570; organism=Citrus clementina; type=EST; length=700bp
CTGTATTGTTTTTCTTTGATTCAGAGCTCTTCACGAGCACTGTCTTCTCG
CCAGAATTAACGAGACAGTGGTGCAAGAAAGAGAAATAAACAAAATTCAG
GTATTTGAATTGGAGTAATTTTGTGAGGTTTTGAGTATTTTAGCATCAAT
GGACCATGCTGAACTTACCACAGAGCAGGTTCTGAAGAGGGACATCCCAT
GGGAGACCTACATGACAACGAAGCTGATTTCAGGAACAGGGCTTCAGCTG
TTAAGACGATATGATAACAGATCAGAAAGTCACCGGGCTCAATTGCTGGA
TGATGATGGTCCATCTTATGTCCGGGTGTTTGTTAGCATTTTAAGAGACA
TATATAAGGAAGAAACAGTGGAATATGTTCTGGCTTTAATTGATGAGATG
CTGACAGCCAATCCAAAGAGAGCCAGATTATTCCATGATAAATCTCTTGC
AAGTGAAGATACTTACGAACCTTTCTTAAGATTGCTGCGGAAAGGTAATT
GGTTCATACAAGAAAAGAGCTGTAAGATATTAGCTTCGATTGTAAGTGCT
AGGCCAAAACCACAGGATCGCTTTTTTGCTAATGGGGAAGCCTCAATTCA
AAAAGCAAATCCACTACCATTGATGATGTTTTAAAATATTGGTTGAATGG
CTTTGTGCACAGCTGAAGAAGCCTTCCCATCTAGTCGTGGCGTTCAGTTG
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