FC868588

Overview
NameFC868588
Unique NameFC868588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868588_ssr37 microsatellite FC868588_ssr37:37..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: SF21_HELAN (Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.322e-82
Identity = 145/218 (66.51%), Postives = 176/218 (80.73%), Query Frame = 2
Query:   59 MADSSSDSVSIDMETPPPSGKDNLIKTSHGSLSVTIYGDQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSRXVRGNAQVPESDIVQACRRLLDERQS 712
            MADS   S+S+   +    GK+++I+T  GS+SVT+ GDQ+KP L+TYPDLALN+MSCFQGLF  PE+ SLLLHNFCIYHINPPGHE GAA+I  D+PV S++DL DQI  VLN+F LG+VMCMG  AGAYILTLF++KY  RV GLIL+SP+CKAPSWTE  YNK+ S  LYYYGMC +VKELL+ RYFS+ V GN ++PESD+V ACR+LLDER S
Sbjct:    1 MADSGH-SISVTFPSFHSGGKEHIIRTGCGSVSVTVCGDQEKPPLITYPDLALNHMSCFQGLFVSPESASLLLHNFCIYHINPPGHELGAASIGIDDPVPSIEDLCDQILVVLNYFRLGSVMCMGAMAGAYILTLFSIKYSERVTGLILISPICKAPSWTERFYNKLTSKTLYYYGMCDLVKELLIHRYFSKEVCGNPEIPESDMVLACRKLLDERDS 217          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_PANTR (Protein NDRG2 OS=Pan troglodytes GN=NDRG2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 66/200 (33.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  107 PPSGKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPESDIVQACRRLL 697
            P + K + ++T +GS++ T+YG     +PA++TY D+ LNY SCFQ LF   E    ++ NF   H++ PG E GA          S+D LAD I  VL +     ++ +GV AGAYIL  +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS+  + GN     S+++Q  R ++
Sbjct:   21 PEAAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKRWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNII 207          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_MACFA (Protein NDRG2 OS=Macaca fascicularis GN=NDRG2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 2
Query:  107 PPSGKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPESDIVQACRRLL 697
            P + K + ++T +GS++ T+YG     +PA++TY D+ LNY SCFQ LF   +   ++  NF   H++ PG E GA          S+D LAD I  VL +     V+ +GV AGAYIL+ +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS+  + GN     S+++Q  R ++
Sbjct:   21 PEAAKIHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTVIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNII 207          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_PONAB (Protein NDRG2 OS=Pongo abelii GN=NDRG2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 65/197 (32.99%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  116 GKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPESDIVQACRRLL 697
            G+ + ++T +GS++ T+YG     +PA++TY D+ LNY SCFQ LF   E    ++ NF   H++ PG E GA          S+D LAD I  VL +     ++ +GV AGAYIL  +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS+  + GN     S+++Q  R ++
Sbjct:   38 GQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNII 221          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_HUMAN (Protein NDRG2 OS=Homo sapiens GN=NDRG2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 65/197 (32.99%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  116 GKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPESDIVQACRRLL 697
            G+ + ++T +GS++ T+YG     +PA++TY D+ LNY SCFQ LF   E    ++ NF   H++ PG E GA          S+D LAD I  VL +     ++ +GV AGAYIL  +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS+  + GN     S+++Q  R ++
Sbjct:   38 GQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNII 221          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_BOVIN (Protein NDRG2 OS=Bos taurus GN=NDRG2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 63/200 (31.50%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  107 PPSGKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPESDIVQACRRLL 697
            P   K + ++T +GS++ T+YG     +PA++TY D+ LNY SCFQ LF   +   ++  NF   H++ PG E GA          S+D LAD I  +L +     ++ +GV AGAY+L+ +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS+  + GN     S+++Q  R ++
Sbjct:   21 PEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFADMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGIGVGAGAYVLSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSISEMILGHLFSQEELSGN-----SELIQKYRNII 207          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_RAT (Protein NDRG2 OS=Rattus norvegicus GN=Ndrg2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 64/197 (32.49%), Postives = 105/197 (53.30%), Query Frame = 2
Query:  116 GKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPESDIVQACRRLL 697
            G+ + ++T +GS++ T+YG     +PA+ TY D+ LNY SCFQ LF   +   ++  NF   H++ PG E GA          S D LAD I  +L +     ++ +GV AGAYIL+ +A+ +   V GL+L++    A  W +W  +K+        G+   + E++L   FS+  + GN     S+++Q  R L+
Sbjct:   38 GQTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFQFGDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSQDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRSLI 221          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_MOUSE (Protein NDRG2 OS=Mus musculus GN=Ndrg2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 59/184 (32.07%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  116 GKDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQV 658
            G+ + ++T +GS++ T+YG     +PA+ TY D+ LNY SCFQ LF   +   ++  NF   H++ PG E GA          S+D LAD I  +L +     ++ +GV AGAYIL+ +A+ +   V GL+L++    A  W +W  +K+        G+   + +++L   FS+  + GN+++
Sbjct:   38 GQTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEII-QNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPDMILGHLFSQEELSGNSEL 213          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG1_BOVIN (Protein NDRG1 OS=Bos taurus GN=NDRG1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKV 559
            I+T HGS+ VT+ G    ++P ++TY D+ +N+ +C+  LF   +   +  H F + H++ PG + GAA+        S+D LA+ +  VL  FGL +++ MG  AGAYILT FA+     V GL+L++    A  W +W  +K+
Sbjct:   37 IETLHGSIHVTLCGTPKGNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQH-FAVCHVDAPGQQDGAASFPTGYMYPSMDQLAEMLPGVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI 180          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDR1A_XENLA (Protein NDRG1-A OS=Xenopus laevis GN=ndrg1-A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 58/182 (31.87%), Postives = 98/182 (53.85%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSR-XVRGNAQVPES 667
            I+T+HG + VT+ G    ++P ++TY D+ LN+ +CF  LF   +   +  H F + H++ PG + GAA+        S+D LA+ +  V+   GL  VM +G+ AGAYILT FA+ +   V GL+L++    A  W +W   K+        G    + ++++   FS+  V  N ++ E+
Sbjct:   38 IETAHGIVHVTMCGTPKLNRPVILTYHDIGLNHKTCFNSLFNFEDMHEISQH-FSVCHVDAPGQQEGAASFPAGYMYPSMDQLAEMLPGVVQQLGLRTVMGLGIGAGAYILTRFALNHPSMVEGLVLININPCAEGWMDWAATKIS-------GWTNALPDMVISHLFSKDEVHSNPELVET 211          
The following BLAST results are available for this feature:
BLAST of FC868588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SF21_HELAN7.322e-8266.51Pollen-specific protein SF21 OS=Helianthus annuus ... [more]
NDRG2_PANTR2.241e-2233.00Protein NDRG2 OS=Pan troglodytes GN=NDRG2 PE=2 SV=... [more]
NDRG2_MACFA3.822e-2233.00Protein NDRG2 OS=Macaca fascicularis GN=NDRG2 PE=2... [more]
NDRG2_PONAB6.519e-2232.99Protein NDRG2 OS=Pongo abelii GN=NDRG2 PE=2 SV=2[more]
NDRG2_HUMAN6.519e-2232.99Protein NDRG2 OS=Homo sapiens GN=NDRG2 PE=1 SV=2[more]
NDRG2_BOVIN8.515e-2231.50Protein NDRG2 OS=Bos taurus GN=NDRG2 PE=2 SV=1[more]
NDRG2_RAT4.226e-2132.49Protein NDRG2 OS=Rattus norvegicus GN=Ndrg2 PE=1 S... [more]
NDRG2_MOUSE9.414e-2132.07Protein NDRG2 OS=Mus musculus GN=Ndrg2 PE=1 SV=1[more]
NDRG1_BOVIN2.739e-2035.86Protein NDRG1 OS=Bos taurus GN=NDRG1 PE=2 SV=1[more]
NDR1A_XENLA2.739e-2031.87Protein NDRG1-A OS=Xenopus laevis GN=ndrg1-A PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC31002C07EF AbioticL1 Citrus clementina cDNA clone C31002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868588 ID=FC868588; Name=FC868588; organism=Citrus clementina; type=EST; length=722bp
GAATGAGGCTTTGAATTGAGAATCAGTAGAGAGAGAAGAGAGAGAGAGAG
AGAGAAAGATGGCAGATTCTTCAAGCGATTCGGTTTCCATTGATATGGAG
ACTCCTCCTCCTAGTGGCAAGGACAATCTTATAAAAACTTCCCATGGTTC
TTTGTCTGTTACCATCTATGGGGACCAGGACAAGCCAGCTCTTGTCACTT
ATCCTGATTTAGCTCTAAACTATATGTCCTGCTTTCAAGGATTATTCTTC
TGCCCAGAAGCATGTTCCTTGCTACTGCACAACTTTTGCATATATCATAT
AAATCCTCCTGGCCACGAGTTTGGAGCTGCGGCAATTAGTGATGATGAAC
CTGTACTCTCTGTTGATGATTTAGCGGATCAAATCGCTGAGGTTCTTAAC
CATTTTGGACTTGGTGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTA
CATTCTTACACTATTTGCTATGAAATATAGGCACCGTGTACTTGGGTTAA
TCCTAGTTTCTCCTCTGTGCAAAGCACCCTCTTGGACAGAATGGTTGTAT
AATAAGGTAATGTCAAATTTACTCTACTACTATGGCATGTGTGGGGTGGT
GAAGGAATTATTGCTAAAGCGGTACTTCAGCAGGNAAGTTCGTGGTAATG
CCCAAGTACCAGAATCTGATATAGTTCAGGCATGCAGAAGACTGCTGGAT
GAAAGACAGAGCTCAATGTTGG
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