FC868592

Overview
NameFC868592
Unique NameFC868592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15330 contig Ccv1_Contig15330:186..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  173 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSNVEKGGETIFP 565
            PR   +   +SD E + + DLAK +L  + V D E+GK   ++ R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L Y+S+V  GG T+FP
Sbjct:  335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA1_CAEEL (Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/150 (35.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  137 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---DKMNQQLG-GHRIATVLMYLSNVEKGGETIFPNSE 574
            + P +V    +NP A ++K  +SD+E   + +LAK KL  + V D+ +GK + +  R S   +L + + ++V ++  RI   T L  E  E +QI +Y  G  Y+PHFD  +    K  + LG G+RIATVL Y+S    GG T+F  ++
Sbjct:  316 YAPIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAK 465          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  170 NPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQL--GGHRIATVLMYLSNVEKGGETIFPN 568
            +P    Y   +SDEE + +  LAK KL  + V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R   +  L   G+R+AT L Y+S+VE GG T+FP+
Sbjct:  336 SPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPD 470          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 52/135 (38.52%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  173 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSNVEKGGETIFP 565
            PR   +   +SDEE + + +LAK +L  + V D E+GK   +  R S   +LS  +  +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L Y+S+V  GG T+FP
Sbjct:  317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP 451          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  170 NPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSNVEKGGETIFPN 568
            +P    Y   +SDEE + + ++AK KL  + V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R    D   +   G+R+AT L Y+S+VE GG T+FP+
Sbjct:  337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPD 473          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  170 NPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN---QQLG-GHRIATVLMYLSNVEKGGETIFPN 568
            +P    Y   +SDEE + + ++AK KL  + V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R+      + LG G+R+AT L Y+S+VE GG T+FP+
Sbjct:  335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPD 471          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA3_RAT (Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  143 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFF---RDKMNQQLGGHRIATVLMYLSNVEKGGETIF 562
            P+R   +   P   +Y  F+SDEE   + +LA+  L+ S+VA  E  K +  E R S   +L    D ++ +++ RIAA T L   P   E +Q+++Y  G  YEPHFD        + +   G+R AT+++YLS+VE GG T F
Sbjct:  336 PARKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSGNRAATLMIYLSSVEAGGATAF 478          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  143 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQL----GGHRIATVLMYLSNVEKGGETIF 562
            P +V  L ++P A ++K  + D E + + +LA  KL+ + V ++++G+   +  R S   +L    D ++  +  RI  +T L     E +Q+ +Y  G  Y+PHFDF R +          G+RIATVL Y+S  E+GG T+F
Sbjct:  315 PIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVF 458          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  173 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSNVEKGGETIFP 565
            PR   +   +SD E + + DLAK +L  + +++  +G       R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L Y+S+V  GG T+FP
Sbjct:  335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC868592 vs. ExPASy Swiss-Prot
Match: P4HA3_MOUSE (Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  143 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFF---RDKMNQQLGGHRIATVLMYLSNVEKGGETIF 562
            P+R   +   P   +Y  F+SDEE   + +LA+  L+ S+VA  E  K +  E R S   +L    D ++ +++ RIAA T L   P   E +Q+++Y  G  YEPHFD        + +   G+R+AT ++YLS+VE GG T F
Sbjct:  334 PARKEVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAF 476          
The following BLAST results are available for this feature:
BLAST of FC868592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
P4HA1_RAT1.091e-1839.26Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_CAEEL3.176e-1835.33Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabd... [more]
P4HA2_CHICK4.147e-1837.04Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA1_CHICK7.074e-1838.52Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA2_MOUSE9.239e-1835.77Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]
P4HA2_HUMAN1.207e-1736.50Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4HA3_RAT5.070e-1635.86Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus nor... [more]
P4HA2_CAEEL6.621e-1632.64Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA1_MOUSE6.621e-1636.30Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA3_MOUSE1.129e-1535.86Prolyl 4-hydroxylase subunit alpha-3 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC31002C12EF AbioticL1 Citrus clementina cDNA clone C31002C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868592 ID=FC868592; Name=FC868592; organism=Citrus clementina; type=EST; length=699bp
TGCTTGTTATTTTCTCGCACTTTCTCTTTGTTTCCTTCTTATTTTCCCTG
ATCCATCTGGCTCTGTCAAGGTTCCCGGTTGGCTCAGCGACAAAGAAAAA
AAGACATCGGTGCTGAGGTTGAAGACGAGTACTACGTTTGATCCTTCACG
TGTAACTCAGCTTTCATGGAATCCCAGGGCTTTTATATATAAAGGGTTTT
TGTCAGATGAGGAGTGTGATCATCTTATTGATCTGGCAAAGGACAAGCTT
GAGACTTCAATGGTTGCTGATAATGAATCTGGGAAGAGTATAGCGAGTGA
AGTTCGAACGAGTTCTGGCATGTTTCTTAGCAAAGCTCAGGATGAGATAG
TAGCCAGTATTGAGGCCAGGATCGCTGCATGGACTTTTCTTCCACCAGAA
AATGGGGAAGCCATGCAAATACTGCACTATGAGCATGGTCAAAAGTATGA
GCCACATTTTGATTTTTTTCGCGACAAAATGAATCAACAGCTAGGTGGTC
ATCGAATTGCTACAGTGTTAATGTATTTGTCTAATGTTGAGAAGGGTGGT
GAAACTATCTTTCCCAACTCAGAAGTTTCTCAGTCAAGGGATGGTAACTG
GTCTGAATGTGCTAGAAGGGGCTATGCAGTGAAACCATGAAGGGTGATGC
CTTGTTGTTCTTCAGTCTTCATCCTGATGCATCTACAGATTCAACCAGC
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