FC868675

Overview
NameFC868675
Unique NameFC868675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA2_SOYBN (Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  +S  +Y P+  D+LYA   T+  G+  + FS         V    + D +  Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ FE I+  P F++  F+L LNK+D+FE+KI  VPLN C+WF D+ PV
Sbjct:  169 FMENLQRLSDANYVPTKEDVLYARVRTT--GVVEIQFS--------PVGENKKSDEV--YRLFDVGGQR-NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDENR--NRMMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKDYQPV 315          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA2_PEA (Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum GN=GPA2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  +S  +Y P+  D+LYA   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N++M +++ FE I+  P F++  F+L LNK+D+FE+KI NVPLN C+WF D+ PV
Sbjct:  168 FMENLQRLSDANYVPTKGDVLYARVRTT--GVVEIQFS-PVGENKRSGEV---------YRLFDVGGQR-NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDESK--NRLMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILNVPLNVCEWFKDYQPV 314          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_LOTJA (Guanine nucleotide-binding protein alpha-1 subunit OS=Lotus japonicus GN=GPA1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  +S  +Y P+  D+LYA   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ FE ++  P F++  F+L LNK+D+FE+KI  VPLN C+WF D+ PV
Sbjct:  168 FMENLHRLSDANYVPTKDDVLYARVRTT--GVVEIQFS-PVGENKKSGEV---------YRLFDVGGQR-NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDENK--NRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKDYQPV 314          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_LUPLU (Guanine nucleotide-binding protein alpha-1 subunit OS=Lupinus luteus GN=GPA1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 60/162 (37.04%), Postives = 91/162 (56.17%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  +S  +Y P+  D+LYA   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+M  +++ FE I+  P F++  F+L LNK+D+FE+KI  VPLN C+WF D+ PV
Sbjct:  168 FMENLQRLSDANYVPTKEDVLYARVRTT--GVVEIQFS-PVGENKRSGEV---------YRLFDVGGQR-NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDENK--NRMTETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKDYQPV 314          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_PEA (Guanine nucleotide-binding protein alpha-1 subunit OS=Pisum sativum GN=GPA1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  +S  +Y P+  D+L A   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFCVA+S+YDQ   +      N+MM +++ FE ++    F++  F+L LNK+D+FE+KI +VPLN C+WF D+ PV
Sbjct:  168 FMENLQRLSDANYVPTKEDVLLARVRTT--GVVEIQFS-PVGENKKSGEV---------YRLFDVGGQR-NERRKWIHLFEGVSAVIFCVAISEYDQTLFEDENK--NRMMETKELFEWVLKQQCFEKTSFMLFLNKFDIFEKKILDVPLNVCEWFKDYQPV 314          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_SOYBN (Guanine nucleotide-binding protein alpha-1 subunit OS=Glycine max GN=GPA1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWF-DDFHPV 488
            F+E L  +S  +Y P+  D LYA   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ FE ++  P F++  F+L LNK+D+FE+K+ NVPLN C+WF  D+ PV
Sbjct:  168 FMENLERLSDANYVPTKEDFLYARVRTT--GVVEIQFS-PVGENKRSGEV---------YRLFDVGGQR-NERRKWIHLFEGVTAVIFCSAISEYDQTLYEDENK--NRMMETKELFEWVLRQPCFEKTSFMLFLNKFDIFEKKVLNVPLNVCEWFKHDYQPV 315          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_ARATH (Guanine nucleotide-binding protein alpha-1 subunit OS=Arabidopsis thaliana GN=GPA1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 57/161 (35.40%), Postives = 92/161 (57.14%), Query Frame = 3
Query:    6 LERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            +E L  +S  +Y P+  D+LYA   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ F+ ++  P F++  F+L LNK+D+FE+K+ +VPLN C+WF D+ PV
Sbjct:  168 MENLKRLSDINYIPTKEDVLYARVRTT--GVVEIQFS-PVGENKKSGEV---------YRLFDVGGQR-NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK--NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPV 313          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_ORYSJ (Guanine nucleotide-binding protein alpha-1 subunit OS=Oryza sativa subsp. japonica GN=GPA1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  ++   Y P+  D+LYA   T  NG+  + FS P   +    +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ F+ ++    F++  F+L LNK+D+FE+KI+ VPL+ C+WF D+ P+
Sbjct:  168 FMENLDRLAEAGYVPTKEDVLYARVRT--NGVVQIQFS-PVGENKRGGEV---------YRLYDVGGQR-NERRKWIHLFEGVNAVIFCAAISEYDQMLFEDETK--NRMMETKELFDWVLKQRCFEKTSFILFLNKFDIFEKKIQKVPLSVCEWFKDYQPI 314          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_ORYSI (Guanine nucleotide-binding protein alpha-1 subunit OS=Oryza sativa subsp. indica GN=GPA1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L  ++   Y P+  D+LYA   T  NG+  + FS P   +    +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ F+ ++    F++  F+L LNK+D+FE+KI+ VPL+ C+WF D+ P+
Sbjct:  168 FMENLDRLAEAGYVPTKEDVLYARVRT--NGVVQIQFS-PVGENKRGGEV---------YRLYDVGGQR-NERRKWIHLFEGVNAVIFCAAISEYDQMLFEDETK--NRMMETKELFDWVLKQRCFEKTSFILFLNKFDIFEKKIQKVPLSVCEWFKDYQPI 314          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA1_SOLLC (Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum lycopersicum GN=GPA1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDFHPV 488
            F+E L   S   Y P+  D+L+A   T+  G+  + FS P   +  S +          Y+L  V  +   E  KW+ +FE +  VIFC A+S+YDQ   +      N+MM +++ FE ++  P F++  F+L LNK+D+FE+K+  VPLN C+WF D+  V
Sbjct:  168 FMENLERFSDVHYIPTKEDVLFARIRTT--GVVEIQFS-PVGENKKSGEV---------YRLFDVGGQR-NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDERK--NRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEQKVPKVPLNACEWFKDYQSV 314          
The following BLAST results are available for this feature:
BLAST of FC868675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
GPA2_SOYBN1.314e-2237.65Guanine nucleotide-binding protein alpha-2 subunit... [more]
GPA2_PEA1.314e-2237.65Guanine nucleotide-binding protein alpha-2 subunit... [more]
GPA1_LOTJA2.241e-2237.04Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_LUPLU6.519e-2237.04Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_PEA2.477e-2136.42Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_SOYBN7.208e-2136.81Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_ARATH9.414e-2135.40Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_ORYSJ1.229e-2033.95Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_ORYSI1.229e-2033.95Guanine nucleotide-binding protein alpha-1 subunit... [more]
GPA1_SOLLC2.097e-2035.19Guanine nucleotide-binding protein alpha-1 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31003D04EF AbioticL1 Citrus clementina cDNA clone C31003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868675 ID=FC868675; Name=FC868675; organism=Citrus clementina; type=EST; length=723bp
ATTTCCTAGAGCGTCTTGTTGATATATCGAGAACAGACTATGAGCCTTCA
GATTTGGATATTCTATATGCTGAGGCTGTCACTTCATCAAATGGGCTTGC
TTGTGTGGACTTCTCATTTCCCCACTCAGCTTCTGATGATTCTGTTGACA
CTGCTGATCAGCATGACTCTTTGCTTAGATACCAACTTATTAGAGTCCAG
GCAAGAGGTCTTGGGGAAAACTGCAAGTGGCTAGAGATGTTTGAAGACAT
TGGAATGGTCATTTTCTGTGTTGCCTTGAGTGACTATGACCAATTTTCTG
TTGACGGGAATGGGTCACTTATGAACAAGATGATGCTGAGCAGGAAATTC
TTTGAAAGCATTGTTACACATCCAACTTTTGATCAGATGGAATTTCTTTT
GATACTAAACAAATATGATCTGTTTGAGGAAAAAATAGAAAATGTACCGT
TGAACCAGTGCGACTGGTTTGATGATTTTCATCCAGTGATCAGCCGTCAT
CACCCCAATGGCAACAGAAACAGCAACAACATCAATCATAGCCCCTCACT
AGGTCAGCTGGCTTCCCACTATGTTGCTGTCAAGTTCAAGAGGCTTTATT
CATCTCTCACTGGGCGGAAATTGTATGTTTCCCCTGGTGAGGGATTGGAG
CCTAATAGTGTTGATGCTGCTCTTAAAAATGCAGGGAGGTTCTAAAGTGG
GATGAAGAGAAAACATCTTTAGC
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