FC868687

Overview
NameFC868687
Unique NameFC868687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868687 vs. ExPASy Swiss-Prot
Match: KIN17_HUMAN (DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.507e-61
Identity = 105/165 (63.64%), Postives = 130/165 (78.79%), Query Frame = 2
Query:   26 MGSNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVD 520
            MG ++FLTPKAIANRIK+KGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQ+ +  +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K D+ D
Sbjct:    1 MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDD 165          
BLAST of FC868687 vs. ExPASy Swiss-Prot
Match: KIN17_MOUSE (DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.295e-61
Identity = 104/165 (63.03%), Postives = 130/165 (78.79%), Query Frame = 2
Query:   26 MGSNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVD 520
            MG ++FL+PKAIANRIK+KGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQ+ +  +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K D+ D
Sbjct:    1 MGKSDFLSPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDD 165          
BLAST of FC868687 vs. ExPASy Swiss-Prot
Match: KIN17_DICDI (KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.682e-57
Identity = 100/163 (61.35%), Postives = 123/163 (75.46%), Query Frame = 2
Query:   26 MGSNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDM 514
            MG  + LTPK IAN+IKAKGLQ+LRWYCQ+C+KQCRDENGFKCH  SESH RQM++F      IV  YS+EFE  FL +M R    SR+ A  VY EYI DRHH+HMN+T W +LTEFVKYLG+T KC+VEETPKGWFI YI+RD E + ++  + K+ K ++
Sbjct:    1 MGKGDALTPKQIANKIKAKGLQRLRWYCQLCEKQCRDENGFKCHISSESHMRQMEVFSNKSSFIVSQYSKEFEEDFLRIMSRQFINSRVPANQVYAEYIKDRHHIHMNATEWTSLTEFVKYLGKTSKCEVEETPKGWFIRYINRDPEYVMRKVSEEKKEKAEL 163          
BLAST of FC868687 vs. ExPASy Swiss-Prot
Match: KIN17_SCHPO (KIN17-like protein OS=Schizosaccharomyces pombe GN=SPBC365.09c PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46
Identity = 83/165 (50.30%), Postives = 112/165 (67.88%), Query Frame = 2
Query:   26 MGSNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVD 520
            MG  E  TPKAI+N +K+KGLQ+LRWYC  CQKQ RDENGFKCH  SE H RQM +   NP + ++ +S +F   F+ L+R +H   +I     Y EYI D++HVHMN+TRW TL+EF K+LGR G C+VEE  KG+FI+YID++   + + +   KR + +  D
Sbjct:    1 MGRAEAGTPKAISNALKSKGLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQMNVIAMNPGKRIQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKFLGRQGMCRVEENEKGFFISYIDKNPANILRNEANKKRERQEKSD 165          
BLAST of FC868687 vs. ExPASy Swiss-Prot
Match: RTS2_YEAST (Zinc finger protein RTS2 OS=Saccharomyces cerevisiae GN=RTS2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 57/114 (50.00%), Postives = 80/114 (70.18%), Query Frame = 2
Query:   80 KGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQM-QIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVE 418
            +GLQK R+YCQ+CQ+QC+D NGF+ H  S SH R++ Q+  ++  R    Y+ +FE GFL+L+++ H    I A  VYNEY+ DR HVHMN+T   +LT+FV+YLGR GK  V+
Sbjct:   17 RGLQKTRYYCQICQRQCKDANGFQSHNKSPSHLRKISQVTAEDARR----YNIQFEKGFLQLLKQRHGEKWIDANKVYNEYVQDRDHVHMNATMHRSLTQFVRYLGRAGKVDVD 126          
The following BLAST results are available for this feature:
BLAST of FC868687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KIN17_HUMAN2.507e-6163.64DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=K... [more]
KIN17_MOUSE7.295e-6163.03DNA/RNA-binding protein KIN17 OS=Mus musculus GN=K... [more]
KIN17_DICDI1.682e-5761.35KIN17-like protein OS=Dictyostelium discoideum GN=... [more]
KIN17_SCHPO2.278e-4650.30KIN17-like protein OS=Schizosaccharomyces pombe GN... [more]
RTS2_YEAST3.420e-2650.00Zinc finger protein RTS2 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionC31003E05EF AbioticL1 Citrus clementina cDNA clone C31003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868687 ID=FC868687; Name=FC868687; organism=Citrus clementina; type=EST; length=732bp
TATGCCGGGGGAAGTTGAATGAGAGATGGGATCGAACGAGTTCTTAACAC
CAAAGGCAATTGCTAACAGAATCAAAGCGAAAGGGTTACAGAAGCTACGA
TGGTACTGCCAGATGTGTCAGAAGCAATGCAGAGACGAGAATGGCTTCAA
ATGCCACTGCATGAGCGAAAGCCACCAGCGTCAGATGCAAATCTTCGGTC
AAAACCCCGACCGAATCGTCGAGGGTTACTCCGAAGAATTCGAAGCCGGC
TTCCTCGAACTCATGAGGCGCAGCCACCGCTTCAGCCGCATCGCCGCCAC
CGTCGTTTACAACGAGTACATCCACGACCGACACCACGTCCACATGAATT
CCACCAGGTGGGCTACCCTGACCGAGTTTGTCAAGTACTTGGGCCGGACC
GGTAAGTGCAAAGTTGAGGAGACTCCAAAGGGTTGGTTTATTACTTATAT
TGATAGAGATTCAGAGACCCTTTTCAAGGAAAAGATGAAAAACAAGAGAA
TTAAGTTGGATATGGTTGACGAAGAGAGGCAAGAGAGAGAGATTCAAAAG
CAAATTGAGATTGCTGCTTCTTCTTCCGTTTCTTCGACCAATCCCCTTTC
TAATTCTGAGGATAACACCACCAGGGAATTGAATTTGGAGGCTGCGGCTT
GCTGTAGGTAGGTTGGCTTTGCACTTGGGTCATCATACAAGATAATGTTA
CCAGTAATGGTAGTGGTAATATGGTAGTAGTA
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