FC868698

Overview
NameFC868698
Unique NameFC868698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868698_ssr65 microsatellite FC868698_ssr65:65..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9380 contig Ccv1_Contig9380:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 59/198 (29.80%), Postives = 104/198 (52.53%), Query Frame = 1
Query:  112 VATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSXK---MLGIINERINFQVSPGQPSSISD 696
            V  YL KKG+S  E  L+ E   +  S       I                E+ P  Y   Y+ LR W  SSL+LYK EL  +L+P+F+H +++L+++ H + A+ F+  F++DH  +H  D++ L+ +  PSH+ E   A   R +K  +   + +++LLL +L +  S     ++ +IN+ I+  + PG+P+ + +
Sbjct:   16 VLDYLAKKGYSRTEAMLRLEASGSGVSVEEKLKSI----------------EETPDAYTHTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLHDFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNGGSIIIKLINQHIDIHIVPGRPTVLEN 197          
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF5_ENCCU (Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi GN=TAF5 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 42/133 (31.58%), Postives = 82/133 (61.65%), Query Frame = 1
Query:  286 QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSXKMLGIINERINFQVSPGQPS 684
            +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +     +L I+N+ ++ +V  G  S
Sbjct:   20 ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIKVYVGPKS 151          
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 64/200 (32.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:  106 EFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ---SXKMLGIINERINFQVSPGQPSSISD 696
            + V  YL KKG+S  E  L+ EI    SS    P       E   +    SE+      Y   Y  LR W   +LDLYK +L  VLYP+F+H ++DL+ K   + A  FF +FR +HE++H  D++ L  +   S +EE+E A   R +K  I   + +++LL+Q+L + +   S  ++ ++N+ I+ +++  Q     D
Sbjct:   17 KIVLDYLFKKGYSRTEAMLRLEI----SSVGAIP------EEQQDWHIGASET------YVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNGSGIIIRLLNQYIDIKITMPQVEGKED 200          
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 47/160 (29.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  208 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSXKMLGIINERINFQVSPGQPSS 687
            + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + SY+LL ++L + Q+ ++  I+ E +   +  G P S
Sbjct:  190 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRS 348          
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 47/160 (29.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  208 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSXKMLGIINERINFQVSPGQPSS 687
            + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + SY+LL ++L + Q+ ++  I+ E +   +  G P S
Sbjct:  191 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIYRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRS 349          
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 62/216 (28.70%), Postives = 104/216 (48.15%), Query Frame = 1
Query:  112 VATYLKKKGFSEAENALQAEIQRNKSSNN-----------------------------TNPIDILN--DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---XKMLGIINERIN 657
            V  YL KKG+   E  L+AE  R  +  N                             +NP ++ +  D E         E  + P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK  +  AR FF+ F  D +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S     ++ +IN+ ++
Sbjct:   64 VLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLD 278          
BLAST of FC868698 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 37/149 (24.83%), Postives = 75/149 (50.34%), Query Frame = 1
Query:  229 ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSXKMLGIINERINFQVSPG 675
            EL+KF     +       Y+  Y +LR++   SLD+YKHEL  VLYP+ +  +  ++A G  ++A+ F   ++ D +  ++  L  L  +  P  L E +   ++   K  I++ + S+ L  +++   +   +  I+++ ++F    G
Sbjct:  101 ELAKFI---DDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASGLREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHSLFKRHIQDRRQEVVADIVSKYLHFDTYEG 246          
The following BLAST results are available for this feature:
BLAST of FC868698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TAF5_SCHPO9.619e-2329.80Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_ENCCU2.896e-1931.58Transcription initiation factor TFIID subunit 5 OS... [more]
TAF73_SCHPO4.940e-1932.00Transcription initiation factor TFIID subunit taf7... [more]
TAF5_HUMAN8.427e-1929.38Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_MOUSE1.101e-1829.38Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_YEAST2.076e-1728.70Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_DROME3.791e-1124.83Transcription initiation factor TFIID subunit 5 OS... [more]
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Properties
Property NameValue
Genbank descriptionC31003F07EF AbioticL1 Citrus clementina cDNA clone C31003F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868698 ID=FC868698; Name=FC868698; organism=Citrus clementina; type=EST; length=700bp
GGGAGACGTCCCTGTTCTCTCTTCCCCTTGATTAACCAGAGAGCATCATC
AACACTGCAGGAGAAAGAAGAAGAAGAAGAGAGAATGGACGAGCTGCAAG
TAGTGGAATTCGTAGCAACGTACTTGAAGAAGAAAGGATTCAGTGAAGCC
GAAAACGCATTGCAAGCTGAAATTCAACGAAACAAGAGCAGTAACAACAC
CAATCCAATCGACATCCTCAACGACCCCGAACTCTCCAAGTTCTTTCGCA
CCTTCTCCGAATCAGAAGATGGTCCAGCTCGTTACCAGGATGAATATAGC
AAGCTTAGGTCATGGACTTATAGCTCCCTGGATCTCTATAAGCATGAGTT
GCTTCATGTGCTTTATCCAGTCTTCATCCATTGTTTCATGGATCTGGTGG
CAAAAGGCCACATCCAAGAGGCTAGAACATTTTTCAATAACTTTCGTGAA
GACCATGAAATGATGCACTTACGAGATCTTCAGAAGTTGGAAGGTGTTCT
TTCGCCCTCTCATCTGGAGGAGATGGAATTTGCTCATTCTTTAAGGCACA
GCAAAGTCAACATTAAGATATGTCAGTATTCATATGAGCTTCTGCTTCAG
TATCTACACAAGACACAATCCANCAAAATGCTTGGGATTATCAATGAACG
CATTAACTTCCAAGTTTCTCCTGGACAGCCCAGCTCAATTTCTGATGATG
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