FC868704

Overview
NameFC868704
Unique NameFC868704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14213 contig Ccv1_Contig14213:223..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868704 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 3.370e-111
Identity = 196/224 (87.50%), Postives = 215/224 (95.98%), Query Frame = 3
Query:   51 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLA 722
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLA
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLA 301          
BLAST of FC868704 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.161e-101
Identity = 182/223 (81.61%), Postives = 200/223 (89.69%), Query Frame = 3
Query:   51 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDL 719
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDL 228          
BLAST of FC868704 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 3
Query:   54 VLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADD----LFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDL 719
            V V GA G+TG+ + ++L  R   +A +  VR  E K K    DD    +   D+ +    +  + G D+  ++             A G RP F   +   P +VD  G  N +DA +  GV++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+ FK  ++
Sbjct:   49 VFVAGATGQTGKRIVEQLLSRG--FAVKAGVRDVE-KAKTSFKDDPSLQIVRADVTEGPDKLAEVIGDDSQAVIC------------ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEESSFKVVEI 259          
The following BLAST results are available for this feature:
BLAST of FC868704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH3.370e-11187.50Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH3.161e-10181.61Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH1.232e-1230.90Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC31003G03EF AbioticL1 Citrus clementina cDNA clone C31003G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868704 ID=FC868704; Name=FC868704; organism=Citrus clementina; type=EST; length=722bp
AGTTGCGTCAGTATCCCGAAGCAGTGAAAGTTTTATCGATGGCTAAGAGT
ACCGTTCTTGTCACCGGCGCTGGTGGTCGAACCGGTCAAATAGTTTATAA
GAAATTAAAGGAGAGGTCAGAGCAATATGCTGCTAGAGGTTTGGTCAGAA
CTGAGGAGAGCAAGCAGAAAATTGGCGGAGCAGATGATCTTTTTATTGGT
GACATAAGGGACTCTAATAGCATCATTCCTGCAATCCAAGGAATCGATGC
TCTCTTAATTCTCACAAGTGCAGTACCAAAGATGAAACCTGATTTTGATC
CTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGAAGAGGGTGCATATCCT
GAACAGGTTGATTGGATTGGTCAGAAAAATCAAATTGATGCTGCTAAGGC
TGCTGGAGTGAAGCAAATTGTGTTGGTTGGATCGATGGGAGGAACAAATC
TTAATCATCCCTTGAACAGTTTGGGCAATGGCAATATATTGGTTTGGAAA
AGAAAGGCTGAGCAGTATTTGGCTGACTCTGGTATTCCATACACAATTAT
AAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGGTATCCGAGAATTGCTTG
TCGGTAAGGATGATGAACTTCTTCAGACAGAAACAAGGACAATTGCCAGG
GCCGATGTTGCCGAAGTCTGCATTCAGGCACTACAGTTTGAGGAGGCCAA
ATTTAAGGCATTTGATCTGGCC
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