FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:54..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.001e-57
Identity = 105/189 (55.56%), Postives = 145/189 (76.72%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            ++E F  LK+ G+ ALIP+ITAGDPDL TT +ALK+LD+ G+D IELGVPYSDPLADGP IQAAATR+L+RG     +L++++ V  Q++ PI LFTYYNPI  RG+D FM+ V   G++GLV+PD+PLEE++ +   A  + ++L+L   PT+PT+R++AI +AS+GF+YL S  GVTGAR S++  V
Sbjct:    4 VSERFRSLKQAGQCALIPFITAGDPDLETTEQALKILDAAGADFIELGVPYSDPLADGPTIQAAATRALSRGVTLEQVLAIVQRVHGQLTAPIILFTYYNPIFYRGIDAFMAQVAAAGVKGLVIPDLPLEESQMVLDAATSHGLDLILLVAPTSPTERIEAIAKASQGFIYLVSVTGVTGARTSVASRV 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_ANAVT (Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57
Identity = 108/189 (57.14%), Postives = 138/189 (73.02%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +++ F  LK+  + ALIP+ITAGDPDL TTA ALK+LDS G+DIIELG+PYSDPLADGPVIQAAATR+L  GT   ++L MLK   P +  PI LFTYYN IL RG+DNF+  V   G+ GLVVPD+PLEE   L K A +  I+L+L   PT+ ++R++AI  +S+GF+YL S  GVTG R+ + G V
Sbjct:    4 ISDRFETLKQNQECALIPFITAGDPDLETTAAALKILDSNGADIIELGIPYSDPLADGPVIQAAATRALQNGTKLESVLEMLKVTTPSLQAPIVLFTYYNSILHRGIDNFLEQVAAAGVAGLVVPDLPLEEAAGLLKPATERGIDLILLIAPTSSSERIEAIARSSQGFIYLVSVTGVTGMRSQVEGRV 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 107/190 (56.32%), Postives = 142/190 (74.74%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            +++ F  L+ + + ALIP+ITAGDPDL TTA+AL+LLD+ G+D+IELGVPYSDPLADGPVIQAAATR+L RG     +L ++KEV P+I  PI LFTYYNPI  RGV+ F+  V+  G++GLVVPD+PLEE ESL K A +  I + L   PT+P +R++AI   S+GF+YL S  GVTG R+ ++  V+
Sbjct:    4 VSDCFQSLRDRRQCALIPFITAGDPDLETTAKALRLLDASGADLIELGVPYSDPLADGPVIQAAATRALGRGVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEEAESLLKPAHEVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTGVTGMRSQVTSRVK 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_MAIZE (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.888e-56
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            +++T   L  +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP  DGP+IQA+  R+LA GT  +A+L ML+EV P++SCP+ L +YY PI+ R     ++ +++ G+ GL+VPD+P     SL  EA  N +ELVL TTP  P DRMK I +ASEGFVYL S  GVTG RA+++  V+
Sbjct:   90 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRS----LAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVE 275          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 104/190 (54.74%), Postives = 141/190 (74.21%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            +++ F +L+ +G+ ALIP++TAGDPDL+TTA AL+ LD+ G+D+IELGVPYSDPLADGPVIQAAATR+L RGT  + +L M+ E+ P+I  PI LFTYYNPI  RGV  F+  +   G+RGLVVPD+PLEE+E+L ++A    IE+ L   PT+  +R++ I   S+GF+YL S+ GVTG R  +   VQ
Sbjct:    4 VSDCFAQLRDRGQCALIPFLTAGDPDLATTASALRQLDASGADLIELGVPYSDPLADGPVIQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVRGLVVPDLPLEESENLLQQAADLGIEVTLLVAPTSSKERIEKIALRSQGFIYLVSTTGVTGMRTKVENRVQ 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.224e-55
Identity = 108/193 (55.96%), Postives = 142/193 (73.58%), Query Frame = 2
Query:  155 VGLAETFTRLKKQG-KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            + +++ F  L+    + ALIP+ITAGDPDL TTA+AL++LD  G+++IELGVPYSDPLADGPVIQAAATRSL RGT   ++L +++ V P++  PI LFTYYNPIL RGV+NF+  + D+G RGLVVPD+PLEE + L + A    IEL L   PT+P +R+KAI   S+GF+YL S  GVTG RA +   V+
Sbjct:    2 ISVSDCFESLRNNSSQCALIPFITAGDPDLETTAKALEVLDRSGANMIELGVPYSDPLADGPVIQAAATRSLNRGTTLESVLEVVQTVSPKLRSPIILFTYYNPILYRGVENFLKKIYDVGARGLVVPDLPLEEADILLEPAKDIGIELTLLVAPTSPKERIKAIAHQSQGFIYLVSVTGVTGMRAQMQTRVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.224e-55
Identity = 104/190 (54.74%), Postives = 137/190 (72.11%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            + E F  L+ QG  ALIP+ITAGDPDLSTTA+AL++LD  G+D+IELGVPYSDPLADGPVIQ+AATR+L RG     +L ++K    ++  PI LFTYYNPI  RG+D F+  ++  G+ GLVVPD+PLEE ESL + A    IE++L   PT+P +R++AI   S+GF+YL S  GVTG R  ++  V+
Sbjct:    4 VTECFRSLRSQGNCALIPFITAGDPDLSTTAQALRILDRAGADLIELGVPYSDPLADGPVIQSAATRALNRGVKLEDVLEIVKNAQGEVKAPIILFTYYNPIYHRGIDVFLDQIKAAGVSGLVVPDLPLEEAESLLQPAAAKGIEVILLVAPTSPPERIQAIALQSQGFIYLVSVTGVTGMRKQVATRVE 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP4 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.651e-55
Identity = 103/191 (53.93%), Postives = 137/191 (71.73%), Query Frame = 2
Query:  155 VGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            V ++  F+ L+ + + ALIP+ITAGDP L  TA+AL++LD  G+D+IELGVPYSDPLADGP IQAAATR+L +GT  +A+L M+  V P +  P+ LFTYYNPI  RGV+ F+  V   G++GLVVPD+PLEE +++  +A    IEL L   PTTP  R+ AI E S+GF+YL S+ GVTG R+ + G V
Sbjct:    2 VSVSTCFSALRDRAQCALIPFITAGDPSLEITAKALQVLDQQGADLIELGVPYSDPLADGPTIQAAATRALQKGTRLDAVLEMISHVAPNLRSPLILFTYYNPIFHRGVEPFLQQVAQAGVQGLVVPDLPLEEADTVLTQAAAVGIELTLLVAPTTPRSRIAAIAERSQGFIYLVSTTGVTGMRSKVEGRV 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803) GN=trpA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 100/190 (52.63%), Postives = 141/190 (74.21%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            +A  F  L+++G+ ALIP++TAGDPDL+TTAEAL++LD  G+D+IELGVPYSDPLADGPVIQAAATR+L +G   + +L++++EV   I+ PI LFTYYNPI  +GV+ F+  ++  G++GLVVPD+PLEE++ L +   +  +EL+L   PT+  +R  AI + S+GFVYL S  GVTG R  +   V+
Sbjct:    4 VAACFNALRQRGECALIPFLTAGDPDLATTAEALRILDRAGADLIELGVPYSDPLADGPVIQAAATRALQKGVKLDDVLAIVREVHQDIAAPIILFTYYNPIFYQGVEVFLDKIKAAGVKGLVVPDLPLEESDRLLEATAERGLELILLVAPTSSPERQTAIAKKSQGFVYLVSVTGVTGVRTEVGSRVE 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_THEEB (Tryptophan synthase alpha chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 102/190 (53.68%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            ++E F   + + + ALIP++TAGDPDL TT  ALK+LD  G+D+IELG+PYSDPLADGPVIQAAATR+L RGT   A+L M  ++  Q++ P+ LF+YYNPI  RGV +F+  V   GI+GLV+PD+PLEE E +  E     +EL L   PTT  +RM+AI  AS+GF+YL S+ GVTG R  ++  VQ
Sbjct:    6 ISERFEHCRARQRCALIPFLTAGDPDLETTVAALKILDDHGADLIELGMPYSDPLADGPVIQAAATRALQRGTRLEAVLEMTTDLHQQLTAPLILFSYYNPIYHRGVSSFLKAVAQAGIKGLVIPDLPLEEAEPVLAETANLGLELTLLIAPTTSPERMRAIATASQGFIYLVSTTGVTGMRQEMASRVQ 195          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_SYNP21.001e-5755.56Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_ANAVT1.708e-5757.14Tryptophan synthase alpha chain OS=Anabaena variab... [more]
TRPA_CYAP81.446e-5656.32Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_MAIZE1.888e-5655.26Indole-3-glycerol phosphate lyase, chloroplastic O... [more]
TRPA_ACAM19.371e-5654.74Tryptophan synthase alpha chain OS=Acaryochloris m... [more]
TRPA_TRIEI1.224e-5555.96Tryptophan synthase alpha chain OS=Trichodesmium e... [more]
TRPA_MICAN1.224e-5554.74Tryptophan synthase alpha chain OS=Microcystis aer... [more]
TRPA_CYAP44.651e-5553.93Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_SYNY32.308e-5452.63Tryptophan synthase alpha chain OS=Synechocystis s... [more]
TRPA_THEEB3.937e-5453.68Tryptophan synthase alpha chain OS=Thermosynechoco... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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