FC868727

Overview
NameFC868727
Unique NameFC868727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.597e-47
Identity = 86/139 (61.87%), Postives = 99/139 (71.22%), Query Frame = 2
Query:  155 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 571
            K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS             TQFGSGWAWL
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWL 155          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.994e-44
Identity = 84/135 (62.22%), Postives = 93/135 (68.89%), Query Frame = 2
Query:  179 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSKP 583
            KF+L+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS             TQFGSGWAWL  KP
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP 134          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 167.933 bits (424), Expect = 4.133e-41
Identity = 78/134 (58.21%), Postives = 93/134 (69.40%), Query Frame = 2
Query:  170 ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 571
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S             TQFG+GWAWL
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWL 139          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 61/132 (46.21%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS             TQFGSGWAWL+
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI 133          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 58/125 (46.40%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  200 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLV 132          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS             T FGSGWAWLV
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV 127          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F   P P+P +ALEP+ M  +T ++H+GKHH AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS             TQFGSGWAWLV
Sbjct:    3 FTQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV 133          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 60/133 (45.11%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 580
            F+L P PY  NALEPH+S +TLE+H  KHH  YV NLN  I GTE  +GKSLE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY LNALEPH+S++TLE+H GKHHRAYV+ LNK I GT   + + LE+++  S   G +   FNNAAQ WNH F+W                  I++ FGS               FGSGWAWLV
Sbjct:    3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV 127          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 58/133 (43.61%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 580
            F+L P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129          
The following BLAST results are available for this feature:
BLAST of FC868727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_SOYBN8.597e-4761.87Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL3.994e-4462.22Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH4.133e-4158.21Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_ANASP8.366e-2646.21Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_SYNY32.691e-2446.40Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_LEGPH5.995e-2444.27Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_PLEBO1.023e-2343.18Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_PSEAE3.886e-2345.11Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_COXBU6.629e-2344.27Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_PSEPU1.477e-2243.61Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]

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Properties
Property NameValue
Genbank descriptionC31004A10EF AbioticL1 Citrus clementina cDNA clone C31004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868727 ID=FC868727; Name=FC868727; organism=Citrus clementina; type=EST; length=666bp
CATCTGCTATAACCAAAGCTGTAATATATAAGGCATGGCATCGGCGCCAG
CAGCAGCTTCATCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGT
GGAAGGAGTACGCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCA
GAGAAAGACTGGTGGCCGAATTTCTGCGAAATTTGATTTGAAGCCTCCAC
CTTATCCACTGAATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAA
TTCCACTGGGGAAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCA
AATTGTTGGAACTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTA
TTGCTTCTTACAACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCA
CAGGCGTGGAACCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGG
CGGAAAGCCGTCTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTT
CTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTT
GGTTCTGGTTGGGCCTGGCTTGTATCAAAGCCAATAATAGAGCTGATGTG
GCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGACAGAGCCTTTTAGTG
GTGAAGACTCCCATGC
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