FC868758

Overview
NameFC868758
Unique NameFC868758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+GEA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNE 113

HSP 2 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRLK-MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LF++KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNE 113

HSP 2 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNE 113

HSP 2 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNE 113

HSP 2 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   88 MGMVISR-LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++ L  LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113

HSP 2 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113

HSP 2 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113

HSP 2 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113

HSP 2 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113

HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG+   +L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
[Close]
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRERIGEA++EL RML+E
Sbjct:   50 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAE 113

HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   88 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG V + L K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 50
The following BLAST results are available for this feature:
BLAST of FC868758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
ARF1_SALBA6.272e-3090.63ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF2_ORYSJ3.113e-2990.63ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ3.113e-2990.63ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE3.113e-2990.63ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF_VIGUN6.935e-2989.06ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF_MAIZE6.935e-2989.06ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH6.935e-2989.06ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_DAUCA6.935e-2989.06ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_ARATH6.935e-2989.06ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_LOCMI9.057e-2990.63ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]

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Properties
Property NameValue
Genbank descriptionC31004D09EF AbioticL1 Citrus clementina cDNA clone C31004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868758 ID=FC868758; Name=FC868758; organism=Citrus clementina; type=EST; length=704bp
GTCTCTAATTTGCTTCCCTATAGTCCTCAGTTCTCTAGAGTTACAGGTCG
CAGCTCATAATTTCTTCTTCAATTTTCAAGAGAAACAATGGGTATGGTAA
TATCAAGACTGAAAATGCTGTTTGCGAGGAAAGAAATGAGGATTTTAATG
GTGGGTCTTGATGCTGCTGGAAAAACAACCATTCTTTACAAGCTCAAACT
TGGAGAGATTGTTACTACCATACCCACAATTGGTATTTTCAAATTCACCC
TCTGTTTTATCTATTACTACTCTGTGATCATTTTGTGAATTAGATTATAT
CATATTCATATATAGTTGATTAAAGAAGATGATTCCTTTTGCTTTTTTTT
TTTTTTTGAAAAACTATTATTTGTATTCATCTGCCTATAACTGGACGGCT
TTGCATCTTTTCCTTAGAATACAAGTCGATTCTTTTTTAAAATTCGAAGA
GAAAATGAGAATGTTTGATAACTGGTTTGATTTTGGACGAGGCAAGGATT
CAATGTGGAAACTGTTGAGTACAAAAATGTAAGCTTCACGGTGTGGGATG
TAGGAGGGCAGGATAAGATAAGACCATTGTGGCGACACTACTTTCAAAAC
ACACATGGTCTGATATTCGTGGTCGATAGTAATGATCGAGAAAGAATTGG
GGAAGCCAAAGATGAACTGCATAGAATGCTGAGCGAGGTTCGCAAAAGTT
TCAT
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