FC868831

Overview
NameFC868831
Unique NameFC868831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9407 contig Ccv1_Contig9407:1..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT13_ARATH (Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.365e-55
Identity = 111/180 (61.67%), Postives = 125/180 (69.44%), Query Frame = 2
Query:   80 MATSLSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            M+ +++CSA  LA+  GPNAT   +AA  IC QL  +NNKF+D A+A+D+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                    S GFIGRHNFAL+ FPT   DYS+FLYQW               ERTQFVAYLIYSSFLTGFVY VVSHW
Sbjct:    1 MSGAITCSAADLATLLGPNAT---AAADYICGQLGTVNNKFTDAAFAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGGSSEGFIGRHNFALRDFPTPTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHW 177          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT11_ARATH (Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.497e-55
Identity = 112/176 (63.64%), Postives = 123/176 (69.89%), Query Frame = 2
Query:   92 LSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            +SCSA  LA   GPNAT   +AA+ IC QL  +NNKF DTA+A+D+TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLD                  +PSNGFIG+H F LK  PT++ DYS FLYQW               ERTQFVAYLIYSSFLTGFVY VVSHW
Sbjct:    1 MSCSATDLAVLLGPNAT---AAANYICGQLGDVNNKFIDTAFAIDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGKHYFGLKDIPTASADYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHW 173          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT15_ARATH (Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.279e-54
Identity = 109/180 (60.56%), Postives = 127/180 (70.56%), Query Frame = 2
Query:   80 MATSLSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            M+ +++CSA  L++  GPNAT   +AA  IC QL ++NNKF+D AYA+D+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                    S+GFIGRHNF L++FPT   DYS+FLYQW               ERT+FVAYLIYSSFLTGFVY VVSHW
Sbjct:    1 MSGAITCSAADLSALLGPNAT---AAADYICGQLGSVNNKFTDAAYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGESSDGFIGRHNFGLQNFPTLTSDYSFFLYQWAFAIAAAGITSGSIAERTKFVAYLIYSSFLTGFVYPVVSHW 177          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT12_SOLLC (Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.164e-53
Identity = 106/180 (58.89%), Postives = 124/180 (68.89%), Query Frame = 2
Query:   80 MATSLSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            MA++++CSA +L    G +A +AT+AA  IC +  A++   ++T YAVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                   PSNGFIG+H F LK FP+  FDYSYFLYQW               ERTQFVAYLIYSSFLTGFVY +VSHW
Sbjct:    1 MASAMTCSAAELFPHLGSSA-NATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGFSYYLFGFAFAFGAPSNGFIGKHFFGLKEFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHW 179          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT11_SOLLC (Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.563e-52
Identity = 107/176 (60.80%), Postives = 119/176 (67.61%), Query Frame = 2
Query:   92 LSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            ++CS D LA F GPN T+A +AAS IC Q   ++++F DT YA+DSTYLLFSAYLVFSMQLGFAML AGSVR  NTMNIMLTNVLD                   PSNGFIGRH F LK  P+++FDY  FLYQW               ERTQFVAYLIYSSFLTGFVY VVSHW
Sbjct:    1 MACSVDTLAPFLGPNTTNAVAAASYICNQFSGVSDRFVDTGYAIDSTYLLFSAYLVFSMQLGFAMLLAGSVR--NTMNIMLTNVLDAAAGGLFYYLFGFAFALGGPSNGFIGRHFFGLKEIPSNSFDYMNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHW 174          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT14_ARATH (Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 105/182 (57.69%), Postives = 120/182 (65.93%), Query Frame = 2
Query:   80 MATSLSCSADQLASFF--GPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            MA++LSCSA  L      G NAT A +AA  IC + + +  KF+D AYA+D+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNV+D                  +PSNGFIG+H F +  FP   FDY YFLYQW               ERTQFVAYLIYSSFLTG VY +VSHW
Sbjct:    1 MASALSCSASDLIPLLSGGANATAAAAAAEYICGRFDTVAGKFTDAAYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVIDAAAGGLFYYLFGFAFAFGSPSNGFIGKHFFGMYDFPQPTFDYPYFLYQWTFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHW 182          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT12_ARATH (Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.049e-48
Identity = 104/180 (57.78%), Postives = 121/180 (67.22%), Query Frame = 2
Query:   95 SCSADQLASFFGP--NATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHN--FALKSFP-TSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            +CSA  L++      N+T + +AA+ +C Q+  I+NK SDT YAVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                  TPSNGFIGRH+  FAL S+P     D+S+FLYQW               ERTQFVAYLIYS+FLTGFVY  VSHW
Sbjct:    7 TCSAVDLSALLSSSSNSTSSLAAATFLCSQISNISNKLSDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGAISYYLFGFAFAFGTPSNGFIGRHHSFFALSSYPERPGSDFSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTFLTGFVYPTVSHW 186          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT11_ORYSJ (Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.417e-45
Identity = 100/175 (57.14%), Postives = 113/175 (64.57%), Query Frame = 2
Query:   95 SCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            +C+AD LA   GP A +AT     +C       N+F+DT  AVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                  TPSNGFIG+  F LK  P + FDY +FL+QW               ERTQFVAYLIYS+FLTGFVY VVSHW
Sbjct:    3 TCAAD-LAPLLGPVAANATD---YLC-------NRFADTTSAVDATYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGTPSNGFIGKQFFGLKHMPQTGFDYDFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHW 166          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT12_ORYSJ (Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.157e-45
Identity = 99/176 (56.25%), Postives = 110/176 (62.50%), Query Frame = 2
Query:   92 LSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            ++  AD L    G   T A +A   +C       N+F+DT  AVDSTYLLFSAYLVF+MQLGFAMLCAGSVRAKNTMNIMLTNVLD                   PSNGFIG+H F LK  P   FDYS+FL+QW               ERTQFVAYLIYS+FLTGFVY VVSHW
Sbjct:    1 MATCADTLGPLLG---TAAANATDYLC-------NQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGAPSNGFIGKHFFGLKQVPQVGFDYSFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHW 166          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT13_ORYSJ (Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.859e-43
Identity = 97/180 (53.89%), Postives = 113/180 (62.78%), Query Frame = 2
Query:   80 MATSLSCSADQLASFFGPNATDATSAASLICPQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            MAT L    D L    G  A ++T AA+ IC       N+F+DT+ AVD+TYLLFSAYLVF+MQLGFAMLCAGSVRAKN+MNIMLTNVLD                  TPS GFIG+  F LK  P + +DY +FL+QW               ERT+F AYLIYS+FLTGFVY VVSHW
Sbjct:    1 MATCL----DSLGPLLG-GAANSTDAANYIC-------NRFTDTSSAVDATYLLFSAYLVFAMQLGFAMLCAGSVRAKNSMNIMLTNVLDAAAGALFYYLFGFAFAFGTPSKGFIGKQFFGLKHMPQTGYDYDFFLFQWAFAIAAAGITSGSIAERTRFSAYLIYSAFLTGFVYPVVSHW 168          
The following BLAST results are available for this feature:
BLAST of FC868831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AMT13_ARATH3.365e-5561.67Ammonium transporter 1 member 3 OS=Arabidopsis tha... [more]
AMT11_ARATH7.497e-5563.64Ammonium transporter 1 member 1 OS=Arabidopsis tha... [more]
AMT15_ARATH1.279e-5460.56Putative ammonium transporter 1 member 5 OS=Arabid... [more]
AMT12_SOLLC9.164e-5358.89Ammonium transporter 1 member 2 OS=Solanum lycoper... [more]
AMT11_SOLLC1.563e-5260.80Ammonium transporter 1 member 1 OS=Solanum lycoper... [more]
AMT14_ARATH3.482e-5257.69Ammonium transporter 1 member 4 OS=Arabidopsis tha... [more]
AMT12_ARATH1.049e-4857.78Ammonium transporter 1 member 2 OS=Arabidopsis tha... [more]
AMT11_ORYSJ1.417e-4557.14Ammonium transporter 1 member 1 OS=Oryza sativa su... [more]
AMT12_ORYSJ3.157e-4556.25Ammonium transporter 1 member 2 OS=Oryza sativa su... [more]
AMT13_ORYSJ3.859e-4353.89Ammonium transporter 1 member 3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC31005D02EF AbioticL1 Citrus clementina cDNA clone C31005D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868831 ID=FC868831; Name=FC868831; organism=Citrus clementina; type=EST; length=619bp
GGTCCTTCTTTGAAACAAAAACTGCCAAGTTTGACTTTTCAAACTCTTTC
AAATCTCAGGCAACCCAAGGTGGGAAGCCATGGCAACGTCCCTGAGTTGT
TCAGCGGACCAACTCGCCAGCTTCTTTGGCCCCAACGCCACCGACGCCAC
GTCAGCAGCCTCCTTAATCTGCCCCCAACTCGAAGCCATCAACAATAAGT
TCTCCGACACCGCATACGCCGTCGACTCCACCTACCTCCTCTTCTCCGCC
TACTTAGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTC
CGTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACG
CCGCCGCCGGCGGCCTCTTCTACTACCTTTTCGGCTTCGCCTTCGCCTTC
GGCACCCCATCCAACGGCTTCATCGGCCGCCACAACTTCGCCCTCAAGTC
CTTCCCCACCTCCAACTTCGACTACAGCTACTTCCTCTACCAATGGGCCT
TCGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGCACC
CAGTTCGTCGCCTACTTAATCTACTCCTCCTTCCTCACGGGCTTCGTCTA
CCTCGTCGTCTCCCATTGG
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