FC868838

Overview
NameFC868838
Unique NameFC868838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC868838 vs. ExPASy Swiss-Prot
Match: Y4837_ARATH (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 1 
Query:  163 KRTHFQ-SDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSS----SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLIT------VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLP--LCALSFDELLQVA 720
            KR   Q +++ +N   KRR   D+  +     E  VYR LCP+                +R  TK+ I++ + + GC +R++TIY S     E     +   E +  AQDAL +V+D IVA    +D+E    T +        R+LVP  Q   +IGK G+ I+ IR  TRA ++++ KD   P  +CA+ +D ++ ++
Sbjct:    6 KRKQIQRNNSESNRNQKRRISHDKINR----DELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVA----SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVIS 197
The following BLAST results are available for this feature:
BLAST of FC868838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4837_ARATH6.981e-1631.00KH domain-containing protein At4g18375 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC31005D09EF AbioticL1 Citrus clementina cDNA clone C31005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868838 ID=FC868838; Name=FC868838; organism=Citrus clementina; type=EST; length=720bp
GAAAGAAAGAGACACTCTCATTTCCGCGCGACTCGATAAGCCGAACGACA
CGACCCGCCGTTTGGCCCTCCTCTACGTCTAACGTGATTAATACTGGAGT
AATATTGTGTGGGAGTAAGTAATTTTGTTGTAATGGCTGGCCAAAGCAAT
ATTAATTATGGAAAAAGGACTCATTTTCAATCTGATGCTGCTACTAATGG
GGGGAGTAAGAGAAGAAACCCAGGGGATGAAACTGAGCAGCGTGGCATTG
GTTCAGAGGACACCGTTTACCGTTACTTGTGCCCGTTGAGAAAGATTGGT
AGTATTATTGGTAAAGGTGGTGAGATTGTAAAACAATTGAGGTCTGAAAC
TAAGTCGAATATTAGGATTAGTGAGACTGTACCCGGGTGCGATGAGCGAA
TTGTTACTATTTATAGTTCCAGTGAGGGAACCAATCTGTTTGAAGATTCT
GGAGAGTTTGTTTCGCCTGCTCAGGATGCTTTGTTCAGGGTCCACGATAG
GATTGTTGCTGAGGATTCGCTTGCTGATGATGAGTTTGGAGAGCTTACAC
TTATTACTGTGAGGATGCTCGTGCCCGCTGATCAGATTGGATGTGTTATT
GGTAAAGGTGGACAAGTGATTCAGAACATTAGGACTGAAACTCGTGCTCA
GATTCGCATTTTGAAGGATGAACATTTGCCCCTTTGTGCTTTGAGTTTTG
ATGAGCTTCTACAGGTAGCT
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