FC868839

Overview
NameFC868839
Unique NameFC868839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC868839 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.072e-28
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:  187 VCCCFHVEDFEDYMNPNSSVYTNCMCLSCFIQHVSNVYTSLFQRGNVHSVPSSIQGAASMTYTASLDNSLSDMYRSPPRPLPYDADPRYFR 459
            V  CF VED ++YMNPNSSVY NC C+ C   +  N+Y S+F+RG   S+PSS+Q  AS+T ++S DN LS+ +RS PRPLPYDADPRYFR
Sbjct:    4 VSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQATASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR 94
The following BLAST results are available for this feature:
BLAST of FC868839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH9.072e-2859.34E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC31005D10EF AbioticL1 Citrus clementina cDNA clone C31005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868839 ID=FC868839; Name=FC868839; organism=Citrus clementina; type=EST; length=466bp
GCGAGGAGCCAGTGAGACTTCTTCTAGCTCAGTGTCCTCTCTCATTGTCT
ATATTGTTATATACTAATTGCTTCAAGAATTCTTTCTTGATGCATATGCT
CAGTGGGGCTTGATCTTGCCAATGAAATTGGACTATCGCCGTTGCGGGTA
TAAAGGAAGATATTAAAGTTTACAACAATGCTGTCTGTTTGCTGCTGTTT
TCATGTGGAGGATTTTGAGGATTATATGAATCCAAACAGCTCTGTATATA
CGAATTGCATGTGTCTCAGCTGCTTTATTCAGCATGTTTCAAATGTGTAT
ACCTCATTATTCCAAAGAGGGAATGTGCATTCTGTCCCTTCATCCATACA
GGGGGCAGCATCAATGACTTATACTGCTTCCCTTGACAATTCTCTCTCTG
ATATGTACCGATCTCCTCCGAGACCCTTGCCTTATGATGCTGATCCTAGA
TATTTCCGCTTGCAAC
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