FC868899

Overview
NameFC868899
Unique NameFC868899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9415 contig Ccv1_Contig9415:57..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_SYNY3 (MutS2 protein OS=Synechocystis sp. (strain PCC 6803) GN=mutSB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.293e-34
Identity = 78/181 (43.09%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNI------------------XXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I  + RV+ ITGPNTGGKT+ LKT+GL  +MAK GL+I + E  ++PWF  + ADIGDE           GH+ +I  I                              DE+GAGT+P EG+AL ++LL   A+    LT+ATTH+GELK LKY +  FENA +EFD+  L P Y++LWG+
Sbjct:  337 IDSQIRVIAITGPNTGGKTVTLKTLGLVALMAKVGLYIPAKETVEMPWFAQILADIGDEQSLQQNLSTFSGHICRIIRILQALPSGVQDVLDPEIDSPNHPIFPSLVLLDEVGAGTDPTEGSALAIALLRHLADQ-PCLTVATTHYGELKALKYQDARFENASVEFDDQSLSPTYRLLWGI 516          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOTH (MutS2 protein OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.107e-34
Identity = 78/176 (44.32%), Postives = 104/176 (59.09%), Query Frame = 3
Query:    3 ILGKHCLFPI--FIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +L K  + PI  +IG+    LV+TGPNTGGKT+ LKTVGL  +M ++GLHI ++E  K+  F  ++ADIGDE            H+K I  I            DE+GAGT+P EG AL MS+LE     GS  T+ATTH+ +LK    +  F ENAC EF+   L+P Y++L GV
Sbjct:  311 LLDKKTVVPIDFWIGEDFNTLVVTGPNTGGKTVTLKTVGLFTLMTQAGLHIPANEGTKMSIFKKVYADIGDEQSIEQSLSTFSSHMKNIVGILKDVDEDSLVLFDELGAGTDPTEGAALAMSILEYLRNKGS-TTVATTHYSQLKAYAVTTKFVENACCEFNVETLRPTYRLLIGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_ALKOO (MutS2 protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.671e-34
Identity = 79/180 (43.89%), Postives = 105/180 (58.33%), Query Frame = 3
Query:    9 GKHCLFP--------IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            G+H L P        +++G+    LVITGPNTGGKT+ LKT+GL  +MA+SGLH+ +    K+  FD +FADIGDE            H+  I NI            DE+GAGT+P EG AL M++L +  E G+ +T+ATTH+ ELK    S +  ENA +EFD   L P YK+L GV
Sbjct:  306 GRHPLLPSNKVVPNTMWLGEDFHTLVITGPNTGGKTVTLKTLGLLTLMAQSGLHVPADYGTKLAIFDQVFADIGDEQSIEQSLSTFSSHMTNIVNIMDNVTEQSLVLFDELGAGTDPTEGAALAMAILNSLREMGT-VTVATTHYSELKQYALSTEGVENASVEFDVNTLSPTYKLLIGV 484          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_HALOH (MutS2 protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.712e-34
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            I +G + + LVITGPNTGGKT+ LKTVGL V+M ++GLHI + E   +  F+ ++ADIGDE            H+ +I               DEIG GT+P EG ALG+++LE   E G + TIATTH+ E+K+  YS D  ENA +EFD   L+P Y++L G+
Sbjct:  326 ITVGNEFKTLVITGPNTGGKTVALKTVGLFVLMVQAGLHIPAEEETVISIFNGVYADIGDEQSIEQNLSTFSSHINRIKRFLGKADARSLVLLDEIGVGTDPREGAALGVAILEHLRERG-VTTIATTHYSEIKSYAYSQDGVENASVEFDMETLQPTYRLLMGI 489          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_ALKMQ (MutS2 protein OS=Alkaliphilus metalliredigens (strain QYMF) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.486e-33
Identity = 75/165 (45.45%), Postives = 101/165 (61.21%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            ++IG+  + LVITGPNTGGKT+ LKT+GL  MMA+SGLH+ +    ++  FD +FADIGDE            H+  I NI            DE+GAGT+P EG ALGM++L    E  ++ T+ATTH+ ELK    +N+  ENA +EFD   L P Y++L GV
Sbjct:  321 LWIGETFQTLVITGPNTGGKTVTLKTLGLLSMMAQSGLHVPADYGTRLAIFDQIFADIGDEQSIEQSLSTFSSHMTNIVNIVEEVTSNSLVLFDELGAGTDPTEGAALGMAILNHLREM-NVTTVATTHYSELKQYALTNEGVENASVEFDVATLSPTYRLLIGV 484          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_STRU0 (MutS2 protein OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.803e-32
Identity = 73/157 (46.50%), Postives = 99/157 (63.06%), Query Frame = 3
Query:   54 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ E +K+  FD+++ADIGDE            H+  I +I            DE+GAGT+P EG +L M++LE    + ++ T+ATTH+ ELK     +D+ ENA MEFD   LKP Y+ + GV
Sbjct:  323 VIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADEGSKIAVFDAIYADIGDEQSIEQSLSTFSSHMTHIVDILEESNSNSLVLFDELGAGTDPQEGASLAMAILEQLRLT-NIKTMATTHYPELKAYGIESDYVENASMEFDSQSLKPTYRFMQGV 478          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_PELTS (MutS2 protein OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.660e-32
Identity = 74/164 (45.12%), Postives = 98/164 (59.76%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWG 521
            I +G     LVITGPNTGGKT+ LKT GL V+MA+SGLHI + E +++  F  +FADIGDE            H+  I  I            DE+GAGT+P EG AL  S+LE    +G+  T+ATTH+GELK    + +  ENA +EFD + L+P Y++L G
Sbjct:  318 IRLGADFDTLVITGPNTGGKTVALKTAGLLVLMAQSGLHIPAGEGSRLGIFRQVFADIGDEQSIEQSLSTFSSHMNNIVEIIGKAGPDSLVLLDELGAGTDPAEGAALAQSILEKLHSAGA-KTVATTHYGELKDFALTRERVENASVEFDAITLRPTYRLLIG 480          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_SYMTH (MutS2 protein OS=Symbiobacterium thermophilum GN=mutS2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.154e-32
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            + IG     LVITGPNTGGKT+ LKT+GL V+MA++GLH+ +    +V  F  +F DIGDE           GH+  I  I            DE+GAGT+P EG AL MS+LE   + G+  T+ATTH+ ELKT  Y+    ENA +EFD   L+P +++L GV
Sbjct:  316 VHIGITFDTLVITGPNTGGKTVALKTMGLFVLMAQAGLHLPAGHGTRVGVFQQVFVDIGDEQSIEQSLSTFSGHMTNIIRILDALEGPALVLLDELGAGTDPTEGAALAMSILEHLHKRGA-KTVATTHYSELKTYAYTRSRVENASVEFDVETLRPTFRLLIGV 479          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_BACSK (MutS2 protein OS=Bacillus clausii (strain KSM-K16) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.391e-31
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 3
Query:   36 IGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            IG + R LVITGPNTGGKT+ LKT+GL  +MA+SGL + ++E  ++  F+ +FADIGDE            H+K I +I            DE+GAGT+P EG AL +S+L+   + G+ L +ATTH+ ELK   Y+ +   NA +EFD   L+P Y++L GV
Sbjct:  324 IGDQVRSLVITGPNTGGKTVTLKTIGLLTLMAQSGLFVPAAEETELAVFEHIFADIGDEQSIEQSLSTFSSHMKNIVSILNEMNENSLILFDELGAGTDPTEGAALAISILDHVYKRGA-LAVATTHYSELKGYAYNREGALNASVEFDVETLRPTYRLLVGV 485          
BLAST of FC868899 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOK5 (MutS2 protein OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = 3
Query:   30 IFIGQKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSLFADIGDEXXXXXXXXXXXGHLKQIGNIXXXXXXXXXXXXDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPAYKILWGV 524
            +++G+    LVITGPNTGGKT+ LKT+GL  +MA SGL I + E + V +F  +FADIGDE            H+  I NI            DE+GAGT+P EG AL +S+LE   + GS++ +ATTH+ ELK     ++  ENA +EFD   LKP YK++ G+
Sbjct:  319 VYMGKDFTCLVITGPNTGGKTVALKTMGLLHIMALSGLMIPARENSTVGFFTEIFADIGDEQSIEQNLSTFSSHMTNIINIINNSDEKSLILFDELGAGTDPTEGAALAVSILENLKDRGSMI-VATTHYSELKAYALKSNGVENASVEFDVDTLKPTYKLMIGI 482          
The following BLAST results are available for this feature:
BLAST of FC868899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MUTS2_SYNY32.293e-3443.09MutS2 protein OS=Synechocystis sp. (strain PCC 680... [more]
MUTS2_CLOTH5.107e-3444.32MutS2 protein OS=Clostridium thermocellum (strain ... [more]
MUTS2_ALKOO6.671e-3443.89MutS2 protein OS=Alkaliphilus oremlandii (strain O... [more]
MUTS2_HALOH8.712e-3444.85MutS2 protein OS=Halothermothrix orenii (strain H ... [more]
MUTS2_ALKMQ1.486e-3345.45MutS2 protein OS=Alkaliphilus metalliredigens (str... [more]
MUTS2_STRU02.803e-3246.50MutS2 protein OS=Streptococcus uberis (strain ATCC... [more]
MUTS2_PELTS3.660e-3245.12MutS2 protein OS=Pelotomaculum thermopropionicum (... [more]
MUTS2_SYMTH8.154e-3244.85MutS2 protein OS=Symbiobacterium thermophilum GN=m... [more]
MUTS2_BACSK1.391e-3144.17MutS2 protein OS=Bacillus clausii (strain KSM-K16)... [more]
MUTS2_CLOK51.817e-3144.24MutS2 protein OS=Clostridium kluyveri (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionC31006C05EF AbioticL1 Citrus clementina cDNA clone C31006C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868899 ID=FC868899; Name=FC868899; organism=Citrus clementina; type=EST; length=526bp
GGATACTTGGAAAGCATTGCTTATTTCCTATTTTTATTGGTCAGAAAACA
AGAGTTCTTGTCATAACTGGCCCCAACACTGGAGGAAAAACTATTTGCTT
AAAGACAGTGGGATTGGCAGTTATGATGGCCAAATCAGGCCTTCACATTT
TATCTTCAGAATATGCAAAGGTTCCTTGGTTTGATTCACTTTTTGCTGAT
ATTGGTGATGAACAGTCCTTGTCACAATCTTTATTTTCCTTCTCTGGCCA
CTTGAAACAAATAGGTAACATATTATCACAGTCGACAAGCCAATCGTTGG
TGCTACTTGATGAAATTGGTGCGGGGACAAATCCCCTTGAAGGCACAGCG
CTTGGGATGTCACTGCTGGAAGCATTTGCTGAAAGTGGTTCTTTATTGAC
AATAGCTACAACACATCATGGTGAACTTAAAACACTGAAGTACAGTAATG
ACTTCTTCGAGAATGCTTGTATGGAGTTCGATGAAGTTAAATTAAAGCCA
GCTTACAAGATCCTTTGGGGAGTACC
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