FC868913

Overview
NameFC868913
Unique NameFC868913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868913_ssr84 microsatellite FC868913_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6308 contig Ccv1_Contig6308:58..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA3_PONAB (Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDE 684
            +G +LAV SS FIGSSFI+                       L E LWWVG+ +M VGE ANF AY +APA LVTPLGALS+++SA+L+ +  +E
Sbjct:   70 VGLVLAVSSSIFIGSSFILKKKGLLQLASKGITRAGQGGHSYLKEWLWWVGLLSMGVGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNE 164          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA3_HUMAN (Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDE 684
            +G +LAV SS FIGSSFI+                       L E LWWVG+ +M  GE ANF AY +APA LVTPLGALS+++SA+L+ +  +E
Sbjct:   70 VGLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSMGAGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNE 164          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA3_MOUSE (Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDEK 687
            +G +LA+ SS FIGSSFI+                       L E LWW G+ +M  GE ANF AY +APA LVTPLGALS+++SA+L+ +  +E+
Sbjct:   70 VGLVLAISSSVFIGSSFILKKKGLLQLADKGITRAGQGGHSYLKEWLWWAGLLSMGAGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNER 165          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA2_MOUSE (Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDEK 687
            IG  LA+ SS FIG SFI+                       L E LWW G+ +M  GE+ANF AY +APA LVTPLGALS++VSA+L+ +  +E+
Sbjct:   12 IGLGLAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNER 107          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA2_PONAB (Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDEK 687
            IG  LA+ SS FIG SFI+                       L E LWW G+ +M  GE+ANF AY +APA LVTPLGALS++VSA+L+ +  +E+
Sbjct:   12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNER 107          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA2_HUMAN (Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDEK 687
            IG  LA+ SS FIG SFI+                       L E LWW G+ +M  GE+ANF AY +APA LVTPLGALS++VSA+L+ +  +E+
Sbjct:   12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNER 107          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA2_BOVIN (Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDEK 687
            IG  LA+ SS FIG SFI+                       L E LWW G+ +M  GE+ANF AY +APA LVTPLGALS++VSA+L+ +  +E+
Sbjct:   12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSTRAGQGGHAYLKEWLWWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNER 107          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA4_HUMAN (Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDE 684
            IG  LA +SS  IGSS I+                       L + +WW G  TM  GE+ANF AY +APA +VTPLGALS+++SA+L+ +   E
Sbjct:  120 IGLGLAFLSSFLIGSSVILKKKGLLRLVATGATRAVDGGFGYLKDAMWWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRE 214          
BLAST of FC868913 vs. ExPASy Swiss-Prot
Match: NIPA4_MOUSE (Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  403 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXL-EPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMFDE 684
            IG  LA +S   IG+S I+                       L +P+WW GM TM  GE+ANF AY +APA +VTPLGALS+++SA+ + +   E
Sbjct:   60 IGVGLAFLSCFLIGTSVILKKKGLIRLVATGATRAVNGGYGYLKDPMWWAGMATMSAGEVANFGAYAFAPATVVTPLGALSVLISAIFSSYCLGE 154          
The following BLAST results are available for this feature:
BLAST of FC868913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NIPA3_PONAB6.981e-1647.37Magnesium transporter NIPA3 OS=Pongo abelii GN=NIP... [more]
NIPA3_HUMAN2.031e-1546.32Magnesium transporter NIPA3 OS=Homo sapiens GN=NIP... [more]
NIPA3_MOUSE3.465e-1543.75Magnesium transporter NIPA3 OS=Mus musculus GN=Nip... [more]
NIPA2_MOUSE1.720e-1444.79Magnesium transporter NIPA2 OS=Mus musculus GN=Nip... [more]
NIPA2_PONAB2.933e-1444.79Magnesium transporter NIPA2 OS=Pongo abelii GN=NIP... [more]
NIPA2_HUMAN2.933e-1444.79Magnesium transporter NIPA2 OS=Homo sapiens GN=NIP... [more]
NIPA2_BOVIN2.933e-1444.79Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2... [more]
NIPA4_HUMAN3.586e-1241.05Magnesium transporter NIPA4 OS=Homo sapiens GN=NIP... [more]
NIPA4_MOUSE7.988e-1240.00Magnesium transporter NIPA4 OS=Mus musculus GN=Nip... [more]
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Properties
Property NameValue
Genbank descriptionC31006D12EF AbioticL1 Citrus clementina cDNA clone C31006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868913 ID=FC868913; Name=FC868913; organism=Citrus clementina; type=EST; length=720bp
GAGGGCGGGCAGGTTCGATGAGTTGTGAGAAATTACGTTCCTTAACGACC
TTCTCCTCGTCTCGCACTCGACGCGCTCGGTTGAGGAAGGAAGGAGACAG
ACAAATTAGTAAAAAAATATGAACCAAAATCAAACCAAATCACTCTGACT
TGTAGTGTGTATCCTTTGAACGGAGCGGTCAACGTTCCTCAAAATCACAG
CAGAAGCTGCTGCTATTGCGTCTTGGAATCAATTTGTCGATAATCAATCA
TCAAAATCAATTATTGGAGTTATTAGTTAATAGCATCGGGTCGGTTGGTC
AATCACTCGCTGACGTGATGTGATGAGTGCCGTTCGATTTCAATTACGTC
GTCTGCTGCGGTCGTAACAAGAAGAAATAGATAGATGTTCTCGAGTAATT
TGATAGGCTTCATTTTGGCTGTGGTCTCAAGTGCCTTCATTGGCTCCAGC
TTTATCATCAAGAAGAAGGGCCTCCGCAAGGCCGGCGCCAACGGCGCTCG
TGCTGGTTCTGGGGGTTATGGTTATTTGTTAGAGCCGCTATGGTGGGTTG
GAATGTTTACGATGATAGTTGGAGAGATTGCCAATTTTGTAGCATACATT
TACGCCCCTGCAGTCCTGGTGACTCCACTTGGTGCATTGAGTATCATCGT
TAGTGCTGTTTTGGCACATTTCATGTTTGATGAGAAATACAGAAAATGGG
AAATGTTGGTTGTCTTTTAT
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