FC868918

Overview
NameFC868918
Unique NameFC868918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/193 (63.73%), Postives = 143/193 (74.09%), Query Frame = 2
Query:   80 VTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            +  +SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+        + G     NVRFRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLP KIL DGE
Sbjct:    7 IPVSSLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNVKSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGE 191          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.548e-56
Identity = 117/193 (60.62%), Postives = 131/193 (67.88%), Query Frame = 2
Query:   95 LSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ-----LTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            L   ST FKGNV  L   P   L + L    + +  Q     L V++Q           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLP KILG GE
Sbjct:   20 LHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA------ATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGE 206          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 65/128 (50.78%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   P KILGDGE
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGE 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 65/128 (50.78%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   P KILGDGE
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGE 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            RL ++ PQPGS          IAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      P KILGDGE
Sbjct:    2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGE 118          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            +L+ + PQPGS          ++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      P K+LGDGE
Sbjct:    2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGE 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/124 (48.39%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            L+ L PQ G+          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI  +      P KILG+GE
Sbjct:    3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTNDG----PLKILGNGE 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 58/125 (46.40%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            +L+NL P+ GS          IAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+                 L D+ A       EV+LE+L   G++  +      P K+LGDGE
Sbjct:    2 KLSNLSPKAGSKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPA-----NTEVTLESLMAAGIVTTNDG----PLKVLGDGE 117          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  287 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDGE 658
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V+L++L KKGLI     + K P KILG+G+
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLI----FKPKFPLKILGNGK 119          
BLAST of FC868918 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  284 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPFKILGDG 655
            R++ + P+ GS          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I  +      P K+LGDG
Sbjct:    2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGIITTNDG----PLKVLGDG 116          
The following BLAST results are available for this feature:
BLAST of FC868918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
RK15_PEA5.720e-6063.7350S ribosomal protein L15, chloroplastic (Fragment... [more]
RK15_ARATH8.548e-5660.6250S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RL15_SYNP65.592e-2350.7850S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE75.592e-2350.7850S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_SYNJA3.625e-2248.8050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_MICAN3.069e-2146.4050S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_CYAP71.166e-2048.3950S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_SYNP21.523e-2046.4050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM02.598e-2048.3950S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CYAP83.393e-2047.2450S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31006E05EF AbioticL1 Citrus clementina cDNA clone C31006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868918 ID=FC868918; Name=FC868918; organism=Citrus clementina; type=EST; length=698bp
AAACAACAAATAATTCCTGAAGCCTGAAGCATAAAATTTCATCATCGCAA
TCATCTCCATCATGGCATCTCTTCTCTCAGTCACTGCAAATTCACTAAGC
TTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAACC
CCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACCAC
CCCAGCTCACTGTCTTAAACCAAGCTGCTTCCGCTTCTGCTTCAGCAACT
GTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTGGG
CCCACAACCGGGGTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAATAG
CTGCTGGTCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAATCG
AGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCTCT
TTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGCTG
GGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTGGT
TTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAAGAAGGGCTT
GATCAATCCCTCAGGAAGAGAAAGGAAACTGCCTTTTAAGATTCTTGGTG
ATGGAGAATAAGCAAGAAGCTGAACTTCAGGCTCGTGCCTCTCTACAT
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