FC868927

Overview
NameFC868927
Unique NameFC868927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868927 vs. ExPASy Swiss-Prot
Match: AHP1_ARATH (Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 3
Query:  411 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLVNDLTRALDQPTIDFKMVDSHVHQL 653
            M++ Q Q+ L +YTKSLF+EG+LD+         DESNPDFV++VV+LFF DS+R++NDL+ +LDQ  +DFK VD HVHQL
Sbjct:    1 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQL 81          
BLAST of FC868927 vs. ExPASy Swiss-Prot
Match: AHP3_ARATH (Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  408 DMEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLVNDLTRALDQP-TIDFKMVDSHVHQL 653
            D  + Q+QRR  ++T SL+ +G LD+         DE +PDFVAEVV+LFF D E+L++++ RALDQ   +DFK+V S VHQL
Sbjct:    2 DTLIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLVGSSVHQL 84          
BLAST of FC868927 vs. ExPASy Swiss-Prot
Match: AHP5_ARATH (Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  417 VGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLVNDLTRALDQP-TIDFKMVDSHVHQL 653
            V Q+QR+  +Y  SL+ +G LDN         DE  PDFVAEVVSLFF D  +L+N ++ +L++P  +DFK VDS VHQL
Sbjct:    6 VAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLERPDNVDFKQVDSGVHQL 85          
BLAST of FC868927 vs. ExPASy Swiss-Prot
Match: AHP2_ARATH (Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  408 DMEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLVNDLTRALDQP-TIDFKMVDSHVHQL 653
            D  + Q+QR+  +YT SL+ +G LD+         D+ +PDFV+EV+SLFF D  +L++++ RALD   T+DF  V + VHQL
Sbjct:    2 DALIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALDTTGTVDFSQVGASVHQL 84          
The following BLAST results are available for this feature:
BLAST of FC868927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AHP1_ARATH2.056e-2056.79Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP3_ARATH3.397e-1549.40Histidine-containing phosphotransfer protein 3 OS=... [more]
AHP5_ARATH1.686e-1450.00Histidine-containing phosphotransfer protein 5 OS=... [more]
AHP2_ARATH1.208e-1243.37Histidine-containing phosphotransfer protein 2 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC31006F04EF AbioticL1 Citrus clementina cDNA clone C31006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868927 ID=FC868927; Name=FC868927; organism=Citrus clementina; type=EST; length=711bp
GGCTAACAGTGAAATATTTGAAATTTTCAACTGAGAGTGAAGGGCTTTGT
ATCAAACAGCGTATTGTTGTTAATATACTATTTTAAAGTCATTTATGCGT
TATAAACTCACGTGTGAGGTTCAATGAAGACCAATAGTTTCAATGAAACA
ATGGAAGAGAGAAACAAGGTTACAAATAAAATAATATTTCCGGCACAAGA
GGTGGCGAAATGAAGGAGAGAGAATGAAAAGATGGTGGGGTTCCTTGTTT
GTTTAAATGCTAATAAATGGCGTAAGTGTAAAGAGCAAGTAAATGGTGGT
GGGGCTGTGATTCTTCTTCTGTAGTTCTATGAGAAGAAAAAGAGAGCAAT
CCAAATAGAGAGCACAAATCCAGATAAACATAAGCAGGGAAGAATAGGAA
CAAGAGAGATATGGAGGTGGGTCAGATGCAAAGAAGGCTTCTGGAGTACA
CAAAATCCTTGTTCATGGAGGGAGTTTTGGATAATCAGTTCTTACAGCTT
CAGCAACTTCAAGACGAAAGCAACCCAGACTTTGTTGCTGAAGTTGTCTC
ACTTTTCTTTGCTGATTCTGAAAGACTTGTCAATGATCTCACCAGGGCTC
TTGATCAGCCAACTATAGACTTCAAAATGGTTGATTCCCATGTTCATCAA
TTGAAGGGTAGCAGCTCAGGNTACTATTCAGAAAGCAAAACACTTGCACA
ATGATGCCCTT
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