FC868933
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 5.521e-34 Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 3 Query: 99 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518 +K+ +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V Sbjct: 32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171 HSP 2 Score: 43.8986 bits (102), Expect = 5.521e-34 Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684 L +LQVET+G+M K E++ FILEQ+RLCL +D Sbjct: 166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 5.521e-34 Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 3 Query: 99 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518 +K+ +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V Sbjct: 32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171 HSP 2 Score: 43.8986 bits (102), Expect = 5.521e-34 Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684 L +LQVET+G+M K E++ FILEQ+RLCL +D Sbjct: 166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 5.521e-34 Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 3 Query: 102 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518 K+ +G L+ ++ LL+ EKQ R + D+ T + + I+++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V Sbjct: 33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171 HSP 2 Score: 43.8986 bits (102), Expect = 5.521e-34 Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684 L +LQVET+G+M K E++ FILEQ+RLCL +D Sbjct: 166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 3.509e-33 Identity = 59/139 (42.45%), Postives = 88/139 (63.31%), Query Frame = 3 Query: 102 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518 K+ +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W NE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V Sbjct: 33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171 HSP 2 Score: 43.8986 bits (102), Expect = 3.509e-33 Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684 L +LQVET+G+M K E++ FILEQ+RLCL +D Sbjct: 166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.315e-32 Identity = 67/151 (44.37%), Postives = 93/151 (61.59%), Query Frame = 3 Query: 81 SPAIIKSKMEGK-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518 SP KS E + G L ++ LL TEKQ R + D T K EI++LC+EA +NE++V LSK+RGQL+ M Y+DQ D+ ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ V Sbjct: 22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQV 172 HSP 2 Score: 44.2838 bits (103), Expect = 1.315e-32 Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1 Query: 586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684 L DLQVET+G M K EKI F ++Q+R+C++ +D Sbjct: 167 LQDLQVETYGTMEKREKITFFIDQMRICMNNKD 199
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3) HSP 1 Score: 103.605 bits (257), Expect = 4.178e-27 Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 3 Query: 114 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518 + + + +DQLL EK+ R + D+A +K+ + +I+ L W LNEQ+ LSKK GQLK M+Y+ + DL+TRI +I+T+ V+ KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ V Sbjct: 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV 165 HSP 2 Score: 38.891 bits (89), Expect = 4.178e-27 Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 1 Query: 586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQDMS 690 L +LQVET+G+M +EKI FILEQ+ L + + D S Sbjct: 160 LCELQVETYGSMEMSEKIQFILEQMELSILKGDYS 194
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.645e-26 Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 3 Query: 120 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLM 503 +++A +++LL EKQ+R + D + K + I L F A D++ LNEQ+V+L KK GQLK M Y+ DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I A +++ Sbjct: 27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEIL 154 HSP 2 Score: 35.039 bits (79), Expect = 2.645e-26 Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 1 Query: 601 VETFGAMAKTEKIAFILEQVRLCLDRQD 684 VET+G+ EK+AFIL+QVRL L R D Sbjct: 159 VETYGSFDLKEKVAFILDQVRLFLLRSD 186 The following BLAST results are available for this feature:
BLAST of FC868933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868933 ID=FC868933; Name=FC868933; organism=Citrus clementina; type=EST; length=701bpback to top |