FC868962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 1.961e-80 Identity = 146/198 (73.74%), Postives = 161/198 (81.31%), Query Frame = 1 Query: 103 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFVVIAEIVLVGGAEYYRITQRLDLED 696 +GV EMLG PLN + R+SAP AS+PSTFK VALF ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ LIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV V+AE+VL+GGAEYYRIT LD ED Sbjct: 4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFED 198
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.045e-25 Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYR 669 ++YGPDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ LIHARWA+LGA G + PE +++ E VWFK GA + LNY G I +++ + ++VL+G AE YR Sbjct: 32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161 HSP 2 Score: 22.7126 bits (47), Expect = 1.045e-25 Identity = 9/15 (60.00%), Postives = 9/15 (60.00%), Query Frame = 2 Query: 695 TASPSGPFDPLDSKD 739 T P GPFDPL D Sbjct: 175 TLYPGGPFDPLGLAD 189
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23 Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR ++L E P YLTGE PGDYG+D GLS P++F+K + +IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + +++ + +++L+G E YRI Sbjct: 58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 185
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23 Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I +++ + ++VL+G E YRI Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.878e-23 Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + +IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I +++ + ++VL+G E YR+ Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV 176
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23 Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 +WYGPDR +L + P YLTGE PGDYG+D GLS P+ F KY+ +IHARWA+LGA G + PE + + E VWFK GA + L+Y G I N+V + ++VL+G E YR+ Sbjct: 38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRV 167
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23 Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + +IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + +++ + +++L+G E YRI Sbjct: 52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 179
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23 Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G + +++ + ++VL+G E YR+ Sbjct: 50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23 Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + +IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + +++ + +++L+G E YRI Sbjct: 53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 180
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23 Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672 WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + +IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I +++ + ++VL+G E YR+ Sbjct: 49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRV 176 The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bpback to top |