FC868962

Overview
NameFC868962
Unique NameFC868962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.961e-80
Identity = 146/198 (73.74%), Postives = 161/198 (81.31%), Query Frame = 1
Query:  103 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFVVIAEIVLVGGAEYYRITQRLDLED 696
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ LIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV  V+AE+VL+GGAEYYRIT  LD ED
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFED 198          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.045e-25
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYR 669
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+   LIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161          

HSP 2 Score: 22.7126 bits (47), Expect = 1.045e-25
Identity = 9/15 (60.00%), Postives = 9/15 (60.00%), Query Frame = 2
Query:  695 TASPSGPFDPLDSKD 739
            T  P GPFDPL   D
Sbjct:  175 TLYPGGPFDPLGLAD 189          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +   +++ +   +++L+G  E YRI
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 185          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I   +++ +   ++VL+G  E YRI
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.878e-23
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I   +++ +   ++VL+G  E YR+
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV 176          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+   +IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRV 167          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +   +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YRI
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 179          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +   +++ +   ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +   +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +   +++ +   +++L+G  E YRI
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 180          
BLAST of FC868962 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYTLIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFVVIAEIVLVGGAEYYRI 672
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +   +IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I   +++ +   ++VL+G  E YR+
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRV 176          
The following BLAST results are available for this feature:
BLAST of FC868962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB26_ARATH1.961e-8073.74Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE1.045e-2544.70Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY2.204e-2343.18Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_MAIZE2.204e-2345.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE2.878e-2344.70Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2_CHLMO3.759e-2342.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA3.759e-2343.18Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP3.759e-2343.18Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA3.759e-2343.18Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_GOSHI3.759e-2343.94Chlorophyll a-b binding protein 151, chloroplastic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007A09EF AbioticL1 Citrus clementina cDNA clone C31007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868962 ID=FC868962; Name=FC868962; organism=Citrus clementina; type=EST; length=754bp
GACTCTCATCTTCACCATTTCTTTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTC
TCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATACATTGATT
CATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGC
CTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGA
CTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAAAAC
ATCCCAATCAACCTTGTTTTTGTTGTCATTGCTGAGATTGTTCTTGTAGG
TGGTGCTGAATATTATAGAATCACCCAACGTTTGGATTTGGAGGACAGCT
TCACCCAGTGGTCCATTTGACCCACTGGATAGCAAGGATCTGACCATTGC
ATGC
back to top