FC868969

Overview
NameFC868969
Unique NameFC868969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868969_ssr52 microsatellite FC868969_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 9.690e-46
Identity = 82/114 (71.93%), Postives = 99/114 (86.84%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            L  F+  ELKSAT NFRPDS++GEGGFG VFKGWI+E+  AP+KPG+GI +AVK L  +G QGHREW+AE+++LGQL HPNLVKLIGYC+E++ RLLVYEFMTRGSLENHLFR+
Sbjct:   53 LKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRR 166          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.071e-44
Identity = 95/183 (51.91%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  239 GSC-KSSASNHSANTIPRTSLVYDAATETRYLNASNRELCAPNEAHLSSDNPDPAPTDEK-----SPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            G+C  SSA   S++  P  +    A+  +R  + ++R     + +  S  + +  PT        S   L  FTF ELK+AT NFRPDS+LGEGGFGYVFKGWI+      +KPGSGI VAVK LK +G QGH+EW+ EV++LGQL HPNLVKL+GYC+E + RLLVYEFM +GSLENHLFR+
Sbjct:    2 GNCLDSSAKVDSSSHSPHAN---SASLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRR 181          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.117e-44
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 2
Query:  428 LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            L  FTF ELK+AT NFRPDS+LGEGGFG VFKGWI+E     +KPG+G+ +AVK L  DG QGH+EW+AEV++LGQ  HPNLVKLIGYC+ED+ RLLVYEFM RGSLENHLFR+
Sbjct:   54 LKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRR 167          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.944e-44
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            FTF ELK AT NFRPDS++GEGGFG VFKGW++E+   P KPG+G+ +AVK L  +G QGHREW+ E+++LGQL HPNLVKLIGYC+ED+ RLLVYEFM +GSLENHLFR+
Sbjct:   55 FTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENHLFRR 165          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.069e-44
Identity = 87/154 (56.49%), Postives = 110/154 (71.43%), Query Frame = 2
Query:  320 TRYLNASNRELCAPNEAHLSSDNPDPAPTDEKSPCQLLQ------FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLF 763
            +R LN S+  L   ++ HLSS     + T  K+  ++L       F+F ELK AT NFR DS++GEGGFG VF+GW++E    P K  SG+ +AVK L PDG QGHREW+ E+++LGQL HPNLVKLIGYC+ED+QRLLVYEFM +GSLENHLF
Sbjct:    7 SRVLNKSSSGL---DDLHLSSCKSSSSATAHKTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLF 157          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 84/134 (62.69%), Postives = 102/134 (76.12%), Query Frame = 2
Query:  377 SSDNPDPAPTDEKSPCQ---LLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            SS +  P+P  E    Q   L  F+F ELKSAT NFRPDS+LGEGGFG VFKGWI+E     ++PG+G+ +AVK L  DG QGH+EW+AEV++LGQ  H +LVKLIGYC+ED+ RLLVYEFM RGSLENHLFR+
Sbjct:   33 SSVSVRPSPRTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRR 166          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.234e-42
Identity = 93/179 (51.96%), Postives = 116/179 (64.80%), Query Frame = 2
Query:  242 SCKSSASNHSANTIPRTSLVYDAATETRYLNASNRELCAPNEAHLSSDNPDPAPTDEK---SPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRK 769
            S K   SNHS +    +S    ++  +R    S   L   + +  SS  P P    E    S   L  FTF ELK+AT NFR D++LGEGGFG VFKGWI++     ++PGSGI VAVK LKP+G QGH+EW+ EV++LGQL HPNLV L+GYC E + RLLVYEFM +GSLENHLFR+
Sbjct:    8 SAKVDNSNHSPHANSASSGSKVSSKTSRSTGPSG--LSTTSYSTDSSFGPLPTLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRR 184          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34
Identity = 65/114 (57.02%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRKTIP 778
            + F +LK+AT NF+PDS+LG+GGFG V++GW++    AP++ GSG+ VA+K L  + +QG  EW +EV+FLG L H NLVKL+GYC ED + LLVYEFM +GSLE+HLFR+  P
Sbjct:   74 YNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSLESHLFRRNDP 187          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.651e-27
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  437 FTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            F F+EL +AT NF PD+ LGEGGFG V+KG ++  G           VAVK L  +GLQG+RE++ EV  L  LHHPNLV LIGYC + DQRLLVYEFM  GSLE+HL
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQV---------VAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHL 172          
BLAST of FC868969 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.522e-27
Identity = 72/140 (51.43%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  341 NRELCAPNEAHLSSDNPDPAPTDEKSPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHL 760
            N E     E  LS D       D+ +  +   FTFQEL  ATGNFR D  LGEGGFG VFKG IE+             VA+K L  +G+QG RE+V EV  L    HPNLVKLIG+C E DQRLLVYE+M +GSLE+HL
Sbjct:   59 NNEGGVGKEDQLSLDVKGLNLNDQVTGKKAQTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQV---------VAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHL 189          
The following BLAST results are available for this feature:
BLAST of FC868969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
NAK_ARATH9.690e-4671.93Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK2B_ARATH1.071e-4451.91Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK1B_ARATH3.117e-4471.05Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
BIK1_ARATH6.944e-4469.37Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
Y3545_ARATH9.069e-4456.49Probable receptor-like protein kinase At3g55450 OS... [more]
APK1A_ARATH7.678e-4362.69Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK2A_ARATH2.234e-4251.96Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
CX32_ARATH3.819e-3457.02Probable serine/threonine-protein kinase Cx32, chl... [more]
PBS1_ARATH2.651e-2758.33Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
RLCK7_ARATH4.522e-2751.43Probable serine/threonine-protein kinase RLCKVII O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007B04EF AbioticL1 Citrus clementina cDNA clone C31007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868969 ID=FC868969; Name=FC868969; organism=Citrus clementina; type=EST; length=783bp
GACTTCACTTCTCTTTTCTCTTTCTTCTTCTATTAAACCAATGGCCAGTC
CCCTCCTCCTCCTCCTCTTGTTTACACTTTGTTTTATCATGCAATTATAT
ATGTAAATTACTACTACTCACTGCAACATGTAACGAAACATAGAAATTAC
AATTAACAAACGAATAAAAAAAATATTAATCTTTCATTTCATGGAAACCA
AGTGCGGTTGCTGGGCTTTTCTTAAACGCGGCGTTAGAGGTTCCTGCAAG
TCCTCTGCTTCTAATCACTCTGCTAACACTATTCCTCGTACTAGTCTTGT
TTATGATGCAGCTACTGAGACGCGATACTTGAATGCTAGTAATCGGGAGC
TATGTGCTCCAAATGAAGCTCACTTGTCCTCGGATAATCCTGATCCAGCT
CCTACAGATGAAAAATCACCATGCCAGCTGCTTCAGTTCACTTTTCAGGA
GCTAAAATCAGCAACTGGAAATTTTAGGCCTGATAGTATTCTTGGGGAGG
GTGGATTTGGATATGTCTTCAAAGGATGGATTGAAGAAAATGGGACAGCT
CCGGCAAAACCCGGGTCGGGAATTACAGTTGCTGTTAAGAGCTTGAAGCC
AGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTGACTTTCTTG
GGCAGCTTCACCATCCTAATCTTGTTAAGCTTATTGGCTACTGCATTGAA
GATGATCAGCGTCTGCTTGTTTATGAATTCATGACTCGTGGTAGTCTTGA
AAATCATCTTTTTCGAAAGACTATACCTCTTCC
back to top