FC868974

Overview
NameFC868974
Unique NameFC868974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_HUMAN (Brix domain-containing protein 2 OS=Homo sapiens GN=BXDC2 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.493e-52
Identity = 101/213 (47.42%), Postives = 145/213 (68.08%), Query Frame = 1
Query:   40 KKRKHTEI-IEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            KK K  EI  EP  K  +  EE  +      +++  I      G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI
Sbjct:   17 KKPKRNEIDAEPPAKRHATAEEVEE------EERDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQI 222          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_RAT (Brix domain-containing protein 2 OS=Rattus norvegicus GN=Bxdc2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.598e-51
Identity = 99/216 (45.83%), Postives = 142/216 (65.74%), Query Frame = 1
Query:   28 QAMGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            QA   K+   +  +P K+ D   E          ++K  I      G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI
Sbjct:   15 QAKKPKKNRKDAGQPAKQADVAKEAE--------EEKDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQI 221          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_BOVIN (Brix domain-containing protein 2 OS=Bos taurus GN=BXDC2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.598e-51
Identity = 102/216 (47.22%), Postives = 147/216 (68.06%), Query Frame = 1
Query:   28 QAMGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            QA   KR   +   P K +D V+EE  +      ++K  I      G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI
Sbjct:   15 QAKKLKRDAKDGKLPAKAND-VSEEAAE------EEKDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQI 222          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_MOUSE (Brix domain-containing protein 2 OS=Mus musculus GN=Bxdc2 PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51
Identity = 99/216 (45.83%), Postives = 142/216 (65.74%), Query Frame = 1
Query:   28 QAMGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            QA   KR   +  +P K+ D   E   +       ++  I      G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI
Sbjct:   15 QAKKPKRSSKDAGQPAKQADVAKEAEEE-------NRDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQI 222          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_PONAB (Brix domain-containing protein 2 OS=Pongo abelii GN=BXDC2 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.932e-51
Identity = 96/212 (45.28%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   40 KKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            K +++ +  EP  K  +  EE  +      +++  I      G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQI  TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI
Sbjct:   18 KPKRNEKDAEPPAKRHATAEEVEE------EERDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQI 222          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_XENLA (Brix domain-containing protein 2 OS=Xenopus laevis GN=bxdc2 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.714e-50
Identity = 87/170 (51.18%), Postives = 128/170 (75.29%), Query Frame = 1
Query:  166 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            G ++NKE+VL+  SR INFR RHLM ++ SL+PH + + K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP GPS KFLV  +HT+ ELK++GN LK SRP+L+F   F ++  + L+KE++ QIFGTP+ H +S+P+ DH+F FSI D+ IWFRNYQI
Sbjct:   47 GKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQI 215          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BRX1_YEAST (Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae GN=BRX1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 85/169 (50.30%), Postives = 120/169 (71.01%), Query Frame = 1
Query:  172 FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQIT 678
            F NK++ L+  SR +N+R+RHL+ ++  LLPH +K+ K++ K      LNE+ EL +C++ LFFE RKH+DLYLW++K PNGP++KF +  +HTM+EL  TGN LK SRP+L+F   F    H++LIKE+++  F  P   RKSKP+ DHV  FSIVDD IW R Y+I+
Sbjct:   27 FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS 194          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_DICDI (Brix domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=bxdc2 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 94/210 (44.76%), Postives = 138/210 (65.71%), Query Frame = 1
Query:   58 EIIEPT---KKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQIT 678
            EIIE     ++++ V EE  +      ++   I+E +       K++VL T +R I  +YRHLM +++SL+PH KK++K++ + +  + +NE  E+KSC+  + F+ RK  D +LWMAK+P GP+VKF +  VHT++EL++TGN LK SRP L F  +F  + H +LIKE+I QI+ TPK H KSKP+ DHVF F   D  IWFRNYQI+
Sbjct:   30 EIIEQEGSEEEEEIVEEESEEEEEEVEEENKNIEENKKDQSIYTKKRVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAILFDVRKGTDCFLWMAKTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQIS 238          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BXDC2_CAEEL (Brix domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=K12H4.3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.919e-45
Identity = 91/199 (45.73%), Postives = 134/199 (67.34%), Query Frame = 1
Query:   82 DDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVD-DHIWFRNYQI 675
            D+S  +++PK+     + + E+        + N+E+VLV CSR  + R R+LM ++  LLPH K D+K++ + S    LNE+ E+K+C+  ++FE RK KD YLWM+    GPS+KFLV+ VHTM+ELK++GN L+ASRP+L+F   F K    KLIK +++Q  GTP  H +S+P+ DHVF FS+ + D IWFRN+QI
Sbjct:   37 DESDNDDQPKQATEETRKRAEL--------WTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNV-LNEIAEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQI 226          
BLAST of FC868974 vs. ExPASy Swiss-Prot
Match: BRX1_SCHPO (Ribosome biogenesis protein Brix homolog OS=Schizosaccharomyces pombe GN=SPBC800.06 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.227e-43
Identity = 84/165 (50.91%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  181 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 675
            K+KVLV  SR + +R RHL+ ++VS++PH KKD+K+++K  +   LNEL EL +C++  FFE R+ +DLYL +A++PNGP+VKF V  +HTM+EL +TGN LK SRP+L+F   F    H K++KE++ Q FG PK  R+SKP+ D V   +I D  IWFRNY+I
Sbjct:   42 KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEI 205          
The following BLAST results are available for this feature:
BLAST of FC868974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
BXDC2_HUMAN5.493e-5247.42Brix domain-containing protein 2 OS=Homo sapiens G... [more]
BXDC2_RAT1.598e-5145.83Brix domain-containing protein 2 OS=Rattus norvegi... [more]
BXDC2_BOVIN1.598e-5147.22Brix domain-containing protein 2 OS=Bos taurus GN=... [more]
BXDC2_MOUSE2.726e-5145.83Brix domain-containing protein 2 OS=Mus musculus G... [more]
BXDC2_PONAB7.932e-5145.28Brix domain-containing protein 2 OS=Pongo abelii G... [more]
BXDC2_XENLA6.714e-5051.18Brix domain-containing protein 2 OS=Xenopus laevis... [more]
BRX1_YEAST6.948e-4750.30Ribosome biogenesis protein BRX1 OS=Saccharomyces ... [more]
BXDC2_DICDI1.185e-4644.76Brix domain-containing protein 2 homolog OS=Dictyo... [more]
BXDC2_CAEEL2.919e-4545.73Brix domain-containing protein 2 homolog OS=Caenor... [more]
BRX1_SCHPO1.227e-4350.91Ribosome biogenesis protein Brix homolog OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC31007B09EF AbioticL1 Citrus clementina cDNA clone C31007B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868974 ID=FC868974; Name=FC868974; organism=Citrus clementina; type=EST; length=681bp
GCATTCTCAGCAGCAGCAAAATCCAATCAGGCTATGGGGAAGAAACGAAA
GCACACTGAAATTATCGAACCCACAAAGAAAGATGACAGTGTTACCGAAG
AGCGGCCAAAGCGGACGCTTTTGGGCTGGAAAGACAAGATTGAAATAAAA
GAAACTGAAGCCCCAGGTGTTTTTAGAAACAAAGAAAAGGTTTTGGTTAC
TTGCTCGCGTCGCATCAATTTCAGGTATAGGCACTTGATGTTGAATGTGG
TGTCGCTTTTGCCTCACTGTAAGAAGGATAATAAAGTTGAGGCTAAAAGC
AGTAAAGGTGCTACTTTGAATGAGCTTGTTGAGCTCAAGAGCTGTTCGTC
CTGCTTGTTTTTTGAGTGTAGGAAACATAAAGACCTTTATCTGTGGATGG
CCAAGAGCCCCAATGGTCCATCTGTGAAATTTTTAGTAAATGCGGTGCAC
ACAATGGAAGAACTGAAGCTTACTGGAAACCATCTAAAAGCGTCACGACC
TCTTCTGACATTCTCGTCTAATTTTGGTAAAGATGCCCACTGGAAACTTA
TAAAGGAAATGATCATTCAGATATTTGGAACTCCTAAGGAGCACAGGAAG
TCTAAGCCTTACCATGATCATGTTTTTGTTTTCTCCATTGTTGATGATCA
CATATGGTTCAGGAATTACCAGATTACAGTT
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