FC869001

Overview
NameFC869001
Unique NameFC869001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869001_ssr458 microsatellite FC869001_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4983 contig Ccv1_Contig4983:58..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869001 vs. ExPASy Swiss-Prot
Match: IQD32_ARATH (Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.446e-28
Identity = 96/258 (37.21%), Postives = 133/258 (51.55%), Query Frame = 3 
Query:   15 IITC--GSDSAGNDDLDVSESKSSNDKRGWSFRKKSARHRVLSNSVVTETA-SSVKKENLETADVNFQTPSS------VKQSLESTDVSFQTP--------------SSAKKESLELTNVNFQPPNISNVPEKIPTI------------------------------QCIDEKPQLPTPVEPKTSET----IIETNAD---DSPLDESVVVVIQAAVRGILAQRELLKLKNVVKLQAAVRGHMVRRHAVGTLRCVQAI 608
            +I+C  G D++ + +    E+KSS DKRGWSFRKKS + R L  SVV+ET  +S  +E LE+A +   +P +       +QS    +   Q P               S  +E  EL +V  Q   I +  E  P I                              + +  + ++ + VEP+ SE+    I+   +D   D  LDESV+VVIQAAVRG LA+RELL+ K V+KLQAAVRGH+VR  A+G+LRCVQAI
Sbjct:   12 LISCSGGDDTSADPNSTALENKSSGDKRGWSFRKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKSQLPVVTYVAEPVDEKKTQSVIEEKTELLSVEEQ---IDHRTEVSPVIVESKGTETEEDDLIGTELQGPSAADAAKIEEDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAI 266
The following BLAST results are available for this feature:
BLAST of FC869001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD32_ARATH3.446e-2837.21Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionC31007D12EF AbioticL1 Citrus clementina cDNA clone C31007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869001 ID=FC869001; Name=FC869001; organism=Citrus clementina; type=EST; length=613bp
AATTCTTGTTTTCAATTATCACCTGCGGTAGCGACTCAGCTGGCAACGAT
GATCTTGATGTCTCCGAGAGCAAGAGCTCAAATGACAAACGTGGGTGGAG
TTTCCGGAAGAAATCTGCCCGGCATCGAGTGCTAAGCAACAGTGTGGTAA
CAGAAACTGCTTCATCTGTAAAGAAAGAAAATCTGGAGACAGCTGATGTT
AACTTCCAAACCCCTTCATCTGTAAAGCAGAGTCTGGAGTCCACTGATGT
TAGCTTCCAAACTCCTTCATCTGCAAAGAAGGAGAGTCTGGAGTTGACTA
ATGTTAATTTTCAACCACCCAATATCTCCAATGTTCCAGAGAAAATCCCC
ACCATACAGTGCATTGATGAGAAACCCCAGTTGCCAACTCCTGTGGAACC
GAAAACATCTGAGACCATTATTGAGACAAATGCAGATGATTCCCCCCTAG
ATGAGTCTGTTGTTGTTGTCATCCAGGCAGCTGTCAGAGGGATCTTGGCT
CAAAGAGAACTCTTAAAGCTTAAGAATGTGGTTAAGTTGCAAGCTGCTGT
ACGAGGACACATGGTTCGGAGGCACGCTGTGGGAACCCTACGTTGTGTTC
AAGCCATTGNTTA
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