FC869016

Overview
NameFC869016
Unique NameFC869016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4005 contig Ccv1_Contig4005:759..1503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 456.833 bits (1174), Expect = 5.503e-128
Identity = 226/244 (92.62%), Postives = 237/244 (97.13%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKEGHSYSEIINESVIE 733
            GMGPSV RLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRR+TENGMSEDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+VA+MMAQIE+LRK+GHSYSEIINESVIE
Sbjct:  237 GMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIE 480          
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 447.973 bits (1151), Expect = 2.556e-125
Identity = 222/244 (90.98%), Postives = 233/244 (95.49%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKEGHSYSEIINESVIE 733
            GMGPSV RLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGMSEDLAYKNTVECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVYVALMMAQIEILRK+GHSYSEIINESVIE
Sbjct:  247 GMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIE 490          
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 446.817 bits (1148), Expect = 5.695e-125
Identity = 220/244 (90.16%), Postives = 235/244 (96.31%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKEGHSYSEIINESVIE 733
            GMGPSV RLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVE LFRR+TE+GMSEDLAYKNTVECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVYVALMMAQIEILRK+GHSYSEIINESVIE
Sbjct:  253 GMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIE 496          
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 2.026e-122
Identity = 217/244 (88.93%), Postives = 230/244 (94.26%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKEGHSYSEIINESVIE 733
            GMGPSV RLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVE+LFRR+TE GM E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVYVALMMAQIE+LRK+GHSYSEIINESVIE
Sbjct:  235 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIE 478          
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_YEAST (Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae GN=ILV5 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 65/201 (32.34%), Postives = 101/201 (50.25%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 604
            G G +V  L+ +G+     GINSS+AV  DV G+A   A   +VA+GS + + TT E+E  SD++GERG L+G +HG+  + +    ENG S   A+  TVE  T  +  +I   GM  +Y++ S   ++     Y         +  + YE    G+E +  +    +   +E L    +  I    +WKVG+ VR  RP
Sbjct:  198 GSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETKRSLEFNSQPDYREKLEK-ELDTIRNMEIWKVGKEVRKLRP 392          
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_SCHPO (Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv5 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 68/206 (33.01%), Postives = 108/206 (52.43%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG-----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 604
            G G +V  L+ +G+     GINSSFAV+QDV G+A   A+G +VA+GS F + TT ++E  SD+ GERG L+G ++G+  + ++   E G S   A+  TVE  T  +  +I   G+  ++ + S   ++              ++L E Y++V  G+E +  +        R  Y+KE      + +I    +WK GE VRS RP
Sbjct:  205 GSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVAVGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLEYNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399          
BLAST of FC869016 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 64/204 (31.37%), Postives = 106/204 (51.96%), Query Frame = 2
Query:    2 GMGPSVIRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 604
            G G +V  L+ +G+     GINSSFAV+QDV G+A   A+   VA+GS + + TT E+E  SD++GERG L+G +HG+  + +    E G S   A+  TVE  T  +  +I   GM  ++++ S   ++   ++   +  +  P   +    Y+ V  G E +  +    +   +E   A  + +I    +W+ G+ VRS RP
Sbjct:  204 GSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKFKDALKP---VFNNLYDSVKNGDETKRSLEYNSQPDYRERYEA-ELDEIRNLEIWRAGKAVRSLRP 398          
The following BLAST results are available for this feature:
BLAST of FC869016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ILV5_PEA5.503e-12892.62Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH2.556e-12590.98Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL5.695e-12590.16Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_ORYSJ2.026e-12288.93Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_YEAST1.308e-2032.34Ketol-acid reductoisomerase, mitochondrial OS=Sacc... [more]
ILV5_SCHPO1.308e-2033.01Probable ketol-acid reductoisomerase, mitochondria... [more]
ILV5_NEUCR1.107e-1931.37Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionC31007F04EF AbioticL1 Citrus clementina cDNA clone C31007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869016 ID=FC869016; Name=FC869016; organism=Citrus clementina; type=EST; length=745bp
GGGAATGGGTCCATCTGTGATCAGACTCTATGTTCAAGGCAAAGAGATTA
ATGGTGCTGGAATTAATTCCAGTTTTGCTGTACACCAGGATGTTGATGGA
AGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCCTTGGTTCTCCTTT
CACATTTGCCACCACATTAGAGCAGGAGTACAAGAGTGACATCTTTGGGG
AGCGTGGCATTCTACTTGGTGCTGTTCATGGAATTGTGGAATCCTTGTTT
AGAAGGTTCACTGAAAATGGAATGAGTGAGGATCTGGCTTACAAGAATAC
CGTGGAGTGCATAACAGGAATTATATCAAAGATCATCTCAACTCAGGGTA
TGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGACAAAAAGGAATTCGAG
AAAGCTTATAGTGCCTCATATTATCCGTGCATGGAAATCTTATATGAGTG
CTATGAAGATGTGGCCGCTGGCAGTGAGATCCGCAGTGTTGTCTTGGCTG
GACGTCGGTTTTATGAAAAGGAAGGTCTACCAGCTTTCCCTATGGGAAAA
ATTGATCAGACTCGCATGTGGAAAGTTGGTGAGCGAGTCCGATCAACACG
TCCAGCAGGTGACTTAGGCCCATTACACCCATTCACAGCAGGTGTCTATG
TGGCTCTGATGATGGCCCAGATTGAGATCCTGAGGAAAGAAGGGCACTCC
TATTCTGAGATCATCAATGAAAGTGTGATTGAGGTCGGTGGATTC
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