FC869032
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869032 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.279e-40 Identity = 105/204 (51.47%), Postives = 123/204 (60.29%), Query Frame = 1 Query: 88 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLRKEVP 693 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP GAIGALGDRG+FVDEP TGL AVIPPGK +RSALGL+ + P Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALGLKTKGP 194 HSP 2 Score: 74.3294 bits (181), Expect = 6.910e-13 Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 391 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 615 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP AI GKF+ + +E Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272
BLAST of FC869032 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.358e-37 Identity = 101/204 (49.51%), Postives = 110/204 (53.92%), Query Frame = 1 Query: 88 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLRKEVP 693 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALGDRGKFVD+P PTGL AVIPPGKS +SALGL + P Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGP 197 HSP 2 Score: 70.0922 bits (170), Expect = 1.303e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 391 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 615 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of FC869032 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.254e-37 Identity = 97/202 (48.02%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 88 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLRKEVP 693 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGAL DRGKF+D+P PTGL AVIPPGK +SALGL + P Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGP 195 HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 391 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 615 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKFV + +E Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273
BLAST of FC869032 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36 Identity = 98/204 (48.04%), Postives = 109/204 (53.43%), Query Frame = 1 Query: 88 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLRKEVP 693 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALGDRG+F+D+P TGL AVIPPGKS +SALGL + P Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGP 197 HSP 2 Score: 70.0922 bits (170), Expect = 1.303e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 391 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 615 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of FC869032 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35 Identity = 81/119 (68.07%), Postives = 88/119 (73.95%), Query Frame = 1 Query: 337 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKSLRSALGLRKEVP 693 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP GAIGALGDRGKFVD+P PTGL AVIPPGK++RSALGL+++ P Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGP 185 HSP 2 Score: 70.4774 bits (171), Expect = 9.977e-12 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 391 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 615 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP AI GKF+ + E Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263 The following BLAST results are available for this feature:
BLAST of FC869032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC869032 ID=FC869032; Name=FC869032; organism=Citrus clementina; type=EST; length=701bpback to top |