FC869056

Overview
NameFC869056
Unique NameFC869056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9479 contig Ccv1_Contig9479:10..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869056 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23
Identity = 77/211 (36.49%), Postives = 94/211 (44.55%), Query Frame = 1
Query:  112 VASHAAISPELYWKTVLPNSPMPKAVKDLLQPDVLEDKSTSVNVGKGGVN----------------------VDAGKXXXXXXXXXXXXXXXXXXXXXXXD-----KRXXXXXXXXXXXXXXXXXXXPVYVGV----SPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTS--NGAT-FLSRQAAKSTPFSSDKLPEIFTSF 642
            VA  A ++PE YW T LPN+P+P ++ +LL  D  ++KST+V VGKGGVN                      VD GK                             KR                   P+YVGV    +PF Y YAA E QLHDDPN ALFFLEKDL  G +MN+ F       G T FL R  A++ PF S+K  E    F
Sbjct:   17 VAIAADLTPERYWSTALPNTPIPNSLHNLLTFDFTDEKSTNVQVGKGGVNVNTHKGKTGSGTAVNVGKGGVRVDTGKGKPGGGTHVSVGSGKGHGGGVAVHTGKPGKRTDVGVGKGGVTVHTRHKGRPIYVGVKPGANPFVYNYAAKETQLHDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRF 227          
BLAST of FC869056 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.610e-23
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  412 PVYVGVSPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFTSF 642
            PV+V V+PF Y YAA E QLHDDPN ALFFLEKDLHPG  M +HFT T+ G  FL R  A + PFSS+K+PEI + F
Sbjct:  185 PVHVNVAPFIYNYAATETQLHDDPNVALFFLEKDLHPGKTMAVHFTATTAGEKFLPRSEADAMPFSSEKVPEILSRF 261          

HSP 2 Score: 24.6386 bits (52), Expect = 4.610e-23
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  630 LYQFSVKPGSVEA 668
            L +FSVKPGSVEA
Sbjct:  258 LSRFSVKPGSVEA 270          
The following BLAST results are available for this feature:
BLAST of FC869056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RD22_ARATH3.086e-2336.49Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ4.610e-2363.64BURP domain-containing protein 3 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC31008A08EF AbioticL1 Citrus clementina cDNA clone C31008A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869056 ID=FC869056; Name=FC869056; organism=Citrus clementina; type=EST; length=676bp
CTAGATTTTAGATCCATACTATCTTGTATTCTGAGTGTCTTTTGAAACAT
ACTCAAAGCTATAATGGAGTTTCGCTTGTTGCCCATCCTTGCTTTCCTCA
GTCTAGCACTGGTGGCAAGTCATGCTGCCATTTCTCCTGAGCTTTACTGG
AAAACTGTATTGCCAAATTCCCCGATGCCAAAAGCTGTCAAAGATCTTCT
ACAGCCAGATGTGCTGGAAGACAAAAGCACCTCTGTCAACGTAGGGAAGG
GTGGTGTCAATGTGGATGCAGGGAAAGGAAAGCCCGGTGGTGGCACCCAT
GTGAATGTTGGGGGTAAGGGCGTTGGTGTAAACACTGGAAAGCCTGACAA
AAGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCCGTAAGTACAGGAC
ACAAGGGAAAGCCAGTTTATGTTGGAGTAAGCCCATTCAACTATGTATAT
GCTGCAAATGAGAACCAACTCCATGATGACCCGAATACAGCTCTTTTCTT
CTTGGAAAAGGACTTGCATCCTGGGATGAAGATGAACTTGCACTTCACTC
AAACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGCTGCCAAATCAACT
CCTTTCTCGTCTGACAAATTGCCTGAGATCTTTACCAGTTTTCCGTGAAA
CCTGGATCAGTTGAAGCTGAAATAAT
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