FC869085
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 1.374e-41 Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 3 Query: 174 PSRFVRNVAVSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 PSRFVRNVAVSS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGYE EGRPLRVN Sbjct: 60 PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173 HSP 2 Score: 78.1814 bits (191), Expect = 3.190e-14 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 GS +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A NG +L+GR +RV+ Sbjct: 250 GSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 5.221e-41 Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 3 Query: 168 SSPSRFVRNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 S SRF RNVA++SEF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GRPLRVN Sbjct: 54 SPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165 HSP 2 Score: 72.4034 bits (176), Expect = 1.750e-12 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 GS +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A + +G +L+GR +RV+ Sbjct: 197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 5.403e-38 Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 3 Query: 177 SRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 SRFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN Sbjct: 53 SRFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161 HSP 2 Score: 77.0258 bits (188), Expect = 7.106e-14 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 181 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36 Identity = 84/116 (72.41%), Postives = 92/116 (79.31%), Query Frame = 3 Query: 165 PSS--PSRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 PSS SRFVR V + +FDQ ED+ ++G NFSPDLK+FVGNL FS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN Sbjct: 47 PSSCFSSRFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161 HSP 2 Score: 77.0258 bits (188), Expect = 7.106e-14 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 187 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 7.303e-35 Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 3 Query: 177 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 S F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN Sbjct: 57 SSFSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161 HSP 2 Score: 76.2554 bits (186), Expect = 1.212e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 3.624e-34 Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 3 Query: 177 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 S F VA+S +FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN Sbjct: 58 SSFSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162 HSP 2 Score: 77.0258 bits (188), Expect = 7.106e-14 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.428e-22 Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 243 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A + NGY+++GR L VN Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN 129 HSP 2 Score: 81.6481 bits (200), Expect = 2.885e-15 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 255 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 +F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS EV A +G L+GR +RVN Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVN 223
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21 Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 183 FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 FV V + E D+ E +E+ D KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN Sbjct: 107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN 210 HSP 2 Score: 80.1073 bits (196), Expect = 8.394e-15 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 258 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+ A +G L+GR +RVN Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVN 304
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.666e-20 Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 3 Query: 177 SRFVRNVAVSSEFDQEEDLLSDEDGSNF----------------SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 ++F V+V SE D L E G +F S D KLFVGNLP+ +DS LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN Sbjct: 50 TQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN 171 HSP 2 Score: 79.7221 bits (195), Expect = 1.096e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 258 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+ A +G L+GR +RVN Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19 Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 3 Query: 207 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 SE D E +S+ + S + KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224 HSP 2 Score: 85.5001 bits (210), Expect = 1.998e-16 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 Query: 258 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494 + P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+ A +G LEGR +RVN Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318 The following BLAST results are available for this feature:
BLAST of FC869085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869085 ID=FC869085; Name=FC869085; organism=Citrus clementina; type=EST; length=569bpback to top |