FC869112

Overview
NameFC869112
Unique NameFC869112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869112_ssr175 microsatellite FC869112_ssr175:175..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1419 contig Ccv1_Contig1419:42..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 5.249e-71
Identity = 122/150 (81.33%), Postives = 139/150 (92.67%), Query Frame = 1
Query:  112 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVE 561
            RPATF+EDFK  WS++H+RQ+E G+AIQLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFYMNS+T  VRDELDFEFLGNR+GQPY+VQTNI+A+GKGDREQRVNLWFDP+ DYH YTILW+H HIVFYVDDVPIR YK  E
Sbjct:   31 RPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNE 180          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 9.265e-68
Identity = 117/150 (78.00%), Postives = 135/150 (90.00%), Query Frame = 1
Query:  112 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVE 561
            RPA F +DF++ WSD H+ QI+GGRAIQL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFYMNS+T++VRDELDFEFLGNR+GQPYTVQTN++A+GKGDREQRVNLWFDP+ D+H Y I WNH  IVFYVD+VPIRVYK  E
Sbjct:   30 RPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNE 179          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.244e-48
Identity = 85/148 (57.43%), Postives = 111/148 (75.00%), Query Frame = 1
Query:  124 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVERL 567
            F ++++ +W+  H++ + GG  + LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN   IV +VDDVPIR +K  + L
Sbjct:   32 FWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDL 178          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.244e-48
Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  124 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYK 552
            F  ++  TW+  H++ + GG  IQL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY++S T    DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVFYVDD PIRV+K
Sbjct:   31 FGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSS-TNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFK 172          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.391e-47
Identity = 82/152 (53.95%), Postives = 113/152 (74.34%), Query Frame = 1
Query:  121 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVERLHSQ 576
            TF  +F +TW D   + +  G  + L LD+ SG GF +K++YLFG++ M++KLVPG+SAGTVTA+Y+ S  +   DE+DFEFLGN TG PYT+ TN+Y  GKGDREQ+ +LWFDP AD+H Y++LWN HHIVF VDD+P+R +K ++ +  Q
Sbjct:   29 TFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTW-DEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQ 179          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.099e-47
Identity = 85/143 (59.44%), Postives = 109/143 (76.22%), Query Frame = 1
Query:  124 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYK 552
            F  ++  TW+  H++ + GG  + LVLD+ +G GF SK  YLFG  SM IK+V GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  G G+REQR+NLWFDP+ DYH Y++LWN + IVF+VDDVPIRV+K
Sbjct:   32 FGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFK 173          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.047e-47
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  124 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVERL 567
            F +++  TW+  H+  + GGR +QL LD+ +G GF ++  YLFG  SM IKLV GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN+++ GKGDREQR+ LWFDP  DYH Y++LWN + I F+VDD PIRV+K  + L
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDL 178          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.286e-47
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  124 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVERL 567
            F  ++  TW+  H++   GG  IQL LD+ +G GF SK  YLFG  SM IK+VPGDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP  +YH Y+ILWN + IVF+VD+VPIRV+K  + L
Sbjct:   33 FGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDL 179          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.475e-46
Identity = 85/151 (56.29%), Postives = 108/151 (71.52%), Query Frame = 1
Query:  121 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTEN--VRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVERL 567
            +F ++F + WS+ H    + G    L LD ++GCGF +K  Y FG  SMK+KLV GDSAG VTA+YM S       RDE+DFEFLGNRTGQPY +QTN+Y NG G+RE R +LWFDP  DYH Y+ILWN+H +VF+VD VPIRVYK  +++
Sbjct:   24 SFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKV 174          
BLAST of FC869112 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.475e-46
Identity = 82/148 (55.41%), Postives = 111/148 (75.00%), Query Frame = 1
Query:  124 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTVERL 567
            F ++++ +W+  H++ + GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKG+REQR+ LWFDP   YH Y++LWN + IV +VDDVPIR +K  + L
Sbjct:   33 FWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDL 179          
The following BLAST results are available for this feature:
BLAST of FC869112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH6_ARATH5.249e-7181.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH9.265e-6878.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC6.244e-4857.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN6.244e-4862.24Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH1.391e-4753.95Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH3.099e-4759.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT4.047e-4757.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN5.286e-4759.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH4.475e-4656.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC4.475e-4655.41Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31008F07EF AbioticL1 Citrus clementina cDNA clone C31008F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869112 ID=FC869112; Name=FC869112; organism=Citrus clementina; type=EST; length=592bp
CAGATAATATTTTATTGTACGGCTTCCTTTACAGCTATGGCTGTCCTAAG
AAATGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTT
GCGTTTTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGG
TCCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGT
TCTAGACCAAAATTCAGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGT
TCGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGA
ACTGTCACTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGA
GCTTGATTTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCC
AGACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAAC
CTCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAA
CCATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACA
AAACAGTGGAAAGGCTCCATTCTCAATGAACCAACCCATGGG
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