FC869130

Overview
NameFC869130
Unique NameFC869130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9461 contig Ccv1_Contig9461:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: DHQSD_ARATH (Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.324e-70
Identity = 134/190 (70.53%), Postives = 157/190 (82.63%), Query Frame = 2
Query:   41 TMESPNLLVASGS---KLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVF 601
            +ME  N+ VAS S   ++ S  + KNP+LIC P+M +S+DKMV++  KA+  GADLVEIRLD LK+FNP E++KT+IK+SP+PTLFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF  SI GKKP K KVIVSSHNYQ TPS+EDL  LVARIQ +GADIVK ATTA+DI DVAR+F
Sbjct:   67 SMEPSNVYVASNSTEMEIGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMF 256          

HSP 2 Score: 27.7202 bits (60), Expect = 1.324e-70
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  598 FPITVHSQVPIXGLVMGER 654
            F IT  +QVP  GLVMGER
Sbjct:  256 FHITSKAQVPTIGLVMGER 274          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METTH (3-dehydroquinate dehydratase OS=Methanobacterium thermoautotrophicum GN=aroD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 64/165 (38.79%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  113 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRE-NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVFQ 604
            T ICVP+  ++  ++    G+A  +GAD++EIR+DGL+  NP E NI+ LI++   P + T R   EGG + G E+ER+ +L  A E+ AD++D+EL  ARE  + + G      + IVS HN++ TPS+E L  +V   +  G DI K A    ++ D   V Q
Sbjct:    3 TKICVPVFEKTAPEVTESAGRAIDAGADILEIRIDGLQ--NPGEVNIRELIEDIGFPVIATNRSPVEGGHFSGSEDERIKLLMAAAEV-ADFVDIELSSAREDIERVTGSAR---RSIVSYHNFRETPSLEALLRIVRMAKEMG-DIAKVAVMPENLADTLVVLQ 160          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_META3 (3-dehydroquinate dehydratase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=aroD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.967e-19
Identity = 56/165 (33.94%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  116 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSI---RGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVF 601
            +IC+P++ ++++  +    +A    AD+VE R D L++ + ++    + K +  P++ T R  WEGG+Y GD N+R+++ + A+E    +ID+EL+   E N  +   R K   K K+IVS H+++ TPS +DL  +V +    G DI KFAT A +  D+ ++F
Sbjct:    1 MICIPVIDKNINDALKSAEEA-LKVADIVEFRADLLESVDKQD----IEKMAKYPSIITIRADWEGGEYTGDNNKRIELYKTAIENNVKFIDIELK--EEKNKELVEFRNKIGSKTKIIVSYHDFEKTPSKQDLMEIVEKELKIG-DIAKFATMAQNKNDLLKIF 157          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_DESPS (3-dehydroquinate dehydratase OS=Desulfotalea psychrophila GN=aroD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  188 GADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK-CKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVFQ 604
            GAD++E+RLD    +     I   ++      LFT RP WEGG + G E +R+ +L  A+  GA YID+EL+ A E +  +R    E+  ++I+S H+++ T ++  L+ ++ ++Q +GADI K  TTA    DV RVFQ
Sbjct:   27 GADVIEVRLD----YIDVPEIDPFVESLATDLLFTCRPTWEGGLFAGTEEDRLALLAEAVRAGAAYIDLELRSAEESHQYLRTYLAERETELILSYHDFESTATLAKLTGIIDQMQDAGADIGKLITTANSAADVVRVFQ 162          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METJA (3-dehydroquinate dehydratase OS=Methanocaldococcus jannaschii GN=aroD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 58/168 (34.52%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  116 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-----EFNDSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVFQ 604
            +IC+P++ +SV+K +    K     AD+VE R+D LK  +  E+I+   K    P + T R  WEGG + G+  ER+++++ A+E  A ++D+EL+  +     +F D I      K K+I+S H+++ TPS E L  +V +  + G DI KFAT A    DV  + +
Sbjct:    1 MICLPVVEDSVEKAIKTAEKY-LEIADIVEFRIDMLKEVS-EEDIEKFAK---YPCIITVRADWEGGYWKGNNEERLNLIKKAIECNAKFVDIELREEKNKELVKFRDEI----GSKTKIIISYHDFEKTPSKEKLVEIVEKALSIG-DIAKFATMANSKEDVLNILE 158          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METVS (3-dehydroquinate dehydratase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=aroD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 55/164 (33.54%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  116 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFN-DSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVFQ 604
            +IC+PI+  +V+K ++   +A   G D+VE RLD L N    +    + K + +P++ T R  WEGG +    N+R++ L+ A++ GA +IDVEL+  +     + R +   K K+IVS H+++ TP + +L ++V +    G DI KFAT +    DV ++ +
Sbjct:    1 MICIPIIDNTVEKALISAKEALKYG-DIVEFRLDLLDNLTKFD----IEKFAKIPSIITIRANWEGGAWKESNNKRIEFLKHAIKHGAKFIDVELKEEKNLELVTYRNEIGSKTKIIVSYHDFEKTPEINELIDVVEKELKIG-DIAKFATFSNSKKDVLKILE 158          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METM6 (3-dehydroquinate dehydratase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=aroD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  116 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFN-DSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARV 598
            +IC+P++ E+V   +    +A   G D+VE R+D L +       + + K S +P++ T R  WEGG +   +NER+++L+ A++  A +ID+EL+  R       R +   K K+IVS H+++ TP +++L ++V +    G DI KFAT A    D  ++
Sbjct:    1 MICIPVIDENVSDAINSAKEALKYG-DIVEFRVDLLNDVT----FEDIEKFSKIPSILTIRAEWEGGAWKKSDNERIELLKYAIKNNAKFIDIELKEERNLELVKYRNEIGSKTKIIVSYHDFEKTPEIDELIDVVEKELKIG-DIAKFATFAHSKEDTLKI 156          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METBF (3-dehydroquinate dehydratase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=aroD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.137e-17
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:  173 KANASGADLVEIRLD--GLKNFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR--LAMELGADYIDVELQVAREFNDS-IRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVFQ 604
            KA   GADL+EIRLD  G+++     E I+ +  E+ +P + T R I EGG+++G E +R+++L   ++++ G D +D+EL   RE  D  I+  K     VIVSSH++  TP+ +++  ++     +GADI K A       DV  + +
Sbjct:   29 KAAKMGADLLEIRLDLLGIRDLETAAETIRKVKSETGLPVILTNRSITEGGKWEGKEADRIELLTNLISLKDGPDAVDIELSAGREARDQVIKAAKAHGKTVIVSSHDFSRTPAFQEMKTILEEAFLAGADIAKLAVMPQSRRDVLNLLR 178          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METMA (3-dehydroquinate dehydratase OS=Methanosarcina mazei GN=aroD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 54/159 (33.96%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  146 VDKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL--RLAMELGADYIDVELQVA-REFNDSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARVFQ 604
            ++K + +  KA   GAD++EIRLD L    P    E I+ +  E+ +P + T R   EGG++DG E +R  +L   L+++ G D ID+EL    +E N  I+  K  +  VIVSSH++  TP ++++  ++  +  +GADI K A   L + D   + +
Sbjct:   20 LEKPLENSKKAAEKGADILEIRLDLLGIRTPERAAEVIREIKAETGIPIIVTSRSGAEGGKWDGKEEDRTGLLINLLSLKDGPDAIDIELSAGMKERNRVIKAAKDRETAVIVSSHDFLKTPPLQNMRTIIEEMFLAGADIAKLAVMPLSVGDTLNLLR 178          
BLAST of FC869130 vs. ExPASy Swiss-Prot
Match: AROD_METM7 (3-dehydroquinate dehydratase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=aroD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 51/162 (31.48%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  116 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFN-DSIRGKKPEKCKVIVSSHNYQYTPSMEDLSNLVARIQASGADIVKFATTALDITDVARV 598
            +IC+P++ E+V   +    +A   G D+VE R+D LK+       + + + S VP++ T R  WEGG +   +NER+++L+ A++  A ++D+EL+  R       R +     K+I+S H+++ TP +++L  +V +    G DI KFAT A    D  ++
Sbjct:    1 MICIPVIDENVCDAINSAKEALKYG-DIVEFRVDLLKDVT----FEDIEEFSKVPSIITIRAEWEGGNWKKSDNERIELLKHAIKNNAKFVDIELKEERNLELVKYRNESNSNTKIIISYHDFEKTPEIDELIEVVEKELKIG-DIAKFATFAHSKEDTLKI 156          
The following BLAST results are available for this feature:
BLAST of FC869130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
DHQSD_ARATH1.324e-7070.53Bifunctional 3-dehydroquinate dehydratase/shikimat... [more]
AROD_METTH3.585e-2138.793-dehydroquinate dehydratase OS=Methanobacterium t... [more]
AROD_META31.967e-1933.943-dehydroquinate dehydratase OS=Methanococcus aeol... [more]
AROD_DESPS9.762e-1937.863-dehydroquinate dehydratase OS=Desulfotalea psych... [more]
AROD_METJA4.845e-1834.523-dehydroquinate dehydratase OS=Methanocaldococcus... [more]
AROD_METVS6.328e-1833.543-dehydroquinate dehydratase OS=Methanococcus vann... [more]
AROD_METM64.102e-1732.723-dehydroquinate dehydratase OS=Methanococcus mari... [more]
AROD_METBF9.137e-1734.673-dehydroquinate dehydratase OS=Methanosarcina bar... [more]
AROD_METMA2.036e-1633.963-dehydroquinate dehydratase OS=Methanosarcina maz... [more]
AROD_METM72.659e-1631.483-dehydroquinate dehydratase OS=Methanococcus mari... [more]

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Properties
Property NameValue
Genbank descriptionC31008H01EF AbioticL1 Citrus clementina cDNA clone C31008H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869130 ID=FC869130; Name=FC869130; organism=Citrus clementina; type=EST; length=656bp
CATAACTCAAAACTTCCAAGCTCAAGTCACTCACTTTTTCACCATGGAAT
CTCCCAACCTTTTGGTTGCTTCTGGCTCAAAACTTGTAAGTGGAGGTATG
AGGAAGAATCCAACCCTAATTTGCGTTCCTATAATGGGGGAATCAGTGGA
TAAGATGGTGGTCGATATGGGTAAGGCAAATGCTAGTGGTGCTGATCTTG
TCGAAATTCGTTTAGATGGTTTGAAGAATTTCAATCCTCGTGAGAATATC
AAAACTCTGATTAAAGAATCCCCTGTGCCCACCTTGTTCACCTACAGACC
GATTTGGGAGGGTGGTCAGTATGATGGTGATGAAAACGAGCGAGTGGATG
TACTTCGGTTGGCCATGGAGTTGGGAGCTGATTACATTGATGTTGAGCTT
CAGGTTGCTCGTGAGTTCAATGATTCCATACGTGGAAAGAAACCTGAAAA
GTGCAAAGTCATAGTTTCTTCTCACAACTATCAGTATACTCCGTCTATGG
AAGATCTCAGCAATCTTGTGGCAAGGATACAAGCATCTGGAGCTGATATA
GTTAAGTTTGCGACGACTGCATTGGACATTACTGATGTGGCACGCGTTTT
CCAATAACTGTGCATTCTCAAGTTCCAATAANTGGACTTGTTATGGGTGA
GAGGGG
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